Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,526,545 – 15,526,659 |
Length | 114 |
Max. P | 0.978980 |
Location | 15,526,545 – 15,526,659 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.29 |
Mean single sequence MFE | -26.97 |
Consensus MFE | -25.09 |
Energy contribution | -25.53 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -2.49 |
Structure conservation index | 0.93 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.978980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15526545 114 - 22224390 UUGGACAUGCCACAAAUGCAUUAGAACU--AACUCGAUAUGCAAACA----UAUUUGUAUAAUUGAAAACUGUCAACGUUUGACAAAUUUCCCGUCGUAAAAAAAACGGCGGCGUGUAAC ....(((((((((((((((((..((...--...))...)))))....----..)))))......((((..(((((.....)))))..))))..(((((.......))))))))))))... ( -28.70) >DroSim_CAF1 97632 117 - 1 UGGGACAUGCCACAAAUGCAUUAGAACU--CACUCGAUAUGCAAACAUACAUACUUGCAUAAUUGAAAACUGUCAACGUUUGACAAAUUUCCCGUCGUAAAA-AAACGGCGGCGUGUAAC .(..(((((((............(((..--...(((((((((((..........)))))).)))))....(((((.....)))))...)))..(((((....-..))))))))))))..) ( -29.30) >DroYak_CAF1 99639 109 - 1 CAGGACAUGCCACAAAUGCAUUAGAACACACACUCGAUAUGCAAACAU----------AUAAUUGAAAACUGUCAACGUUUGACAAAUUUCCCGUCGUAAAA-AAGCAGCGGCGGGUAAC ..((.....)).....(((((..((........))...))))).....----------............(((((.....))))).....((((((((....-.....)))))))).... ( -22.90) >consensus UAGGACAUGCCACAAAUGCAUUAGAACU__CACUCGAUAUGCAAACAU___UA_UUG_AUAAUUGAAAACUGUCAACGUUUGACAAAUUUCCCGUCGUAAAA_AAACGGCGGCGUGUAAC ....(((((((.....(((((..((........))...))))).....................((((..(((((.....)))))..))))..(((((.......))))))))))))... (-25.09 = -25.53 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:58 2006