Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,502,434 – 15,502,543 |
Length | 109 |
Max. P | 0.671435 |
Location | 15,502,434 – 15,502,543 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 85.41 |
Mean single sequence MFE | -50.22 |
Consensus MFE | -42.87 |
Energy contribution | -44.90 |
Covariance contribution | 2.03 |
Combinations/Pair | 1.09 |
Mean z-score | -1.57 |
Structure conservation index | 0.85 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671435 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15502434 109 + 22224390 AAGGCGGGGCGGUAGGUGGGCGAUGGCGUCUGGGUGGAGCCGUGCCCGUGCCCGUGUCCGUGGCUGCUCCGGAGCACCUGCUGCCUGAGCCUGUGCCGCUGGCGGAGAU .((((.(((((((((((((((.(((((.(((....))))))))))))..(((((....)).))).(((....))))))))))))))..))))...(((....))).... ( -55.80) >DroSec_CAF1 62943 103 + 1 AAGGCGGGGCGGUAGGUGGGCGAUGGCGUCUGGGUGGGGCCGUGC------CCGUGUCCAUGGCUGCUCCGGAGCACCUGCUGCCUGAGCCUGUGCCGCUGGCGGAGAU .((((.((((((((((((.((....)).((((((.(.(((((((.------.......))))))).))))))).))))))))))))..))))...(((....))).... ( -54.30) >DroSim_CAF1 75278 103 + 1 AAGGCGGGGCGGUAGGUGGGCGAUGGCGUCUGGGUGGCGCCGUGC------CCGUGUCCAUGGCUGCUCCGGAGCACCUGCUGCCUGAGCCUGUGCCGCUGGCGGAGAU .((((.(((((((((((((((.((((((((.....))))))))))------))............(((....))))))))))))))..))))...(((....))).... ( -55.90) >DroEre_CAF1 64677 85 + 1 AAGGCGGGGCGGUAGGUGGGCGAAGGCGUCUGGGUGU------------------------GGCUGCUCCGGAGCACCUGCUGUCUGAGCCUGUGCCGCUGGCGGAGAU .((((.((((((((((((.((....)).((((((.((------------------------....)))))))).))))))))))))..))))...(((....))).... ( -41.90) >DroYak_CAF1 69221 91 + 1 AAGGCGGGGCGGUAGGUGGGCGAAGGCGUCUGGGUGUGGG------------------CGUGGCUGCUCCGAAGCACCUGCUGCCUGAGCCUGUGCCGCUGGCGGAGAU .((((.((((((((((((.((....)).....((.(..(.------------------.....)..).))....))))))))))))..))))...(((....))).... ( -43.20) >consensus AAGGCGGGGCGGUAGGUGGGCGAUGGCGUCUGGGUGGGGCCGUGC______CCGUGUCCAUGGCUGCUCCGGAGCACCUGCUGCCUGAGCCUGUGCCGCUGGCGGAGAU .((((.((((((((((((.((....)).((((((.(.(((((((..............))))))).))))))).))))))))))))..))))...(((....))).... (-42.87 = -44.90 + 2.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:36 2006