Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,441,257 – 15,441,365 |
Length | 108 |
Max. P | 0.526100 |
Location | 15,441,257 – 15,441,365 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 78.18 |
Mean single sequence MFE | -46.23 |
Consensus MFE | -29.02 |
Energy contribution | -28.44 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.47 |
Mean z-score | -1.31 |
Structure conservation index | 0.63 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15441257 108 + 22224390 CGGCCAGCUGGGGAUCCGUUUUGCCAUCGGGA---AG------UGGUGCCUCCAGUAGCGAACUGAACAACUCCGUCUGCAGGGCCGUGUAUUUGGCCACCUUUCCGGCCAGAGCCA (((((.(((((((..(((((((.(....).))---))------)))...))))))).(((.((.((.....)).)).)))..)))))((..(((((((........)))))))..)) ( -40.20) >DroVir_CAF1 30049 111 + 1 CCGCCAGCUGCGGAUCCGGCUUGCCGCCGACCAGAGC------CGGCGGCUCCAGCAGCGAGCUAAACAGUUCCGUCUGCAGCGCCGUAUACUUGGCUAUUUUGCCGGCCAGCGCCA .(((..(((((((((...(((.(((((((........------)))))))...))).(.(((((....)))))))))))))))((((....)..(((......))))))..)))... ( -48.70) >DroGri_CAF1 15825 111 + 1 CGGCCAGCUGUGGAUCCGGUUUGCCACUCGCCGUCAA------UGGUGGCUCCAGCAGCGAACUAAACAGUUCCGUUUGCAGUGCCGUAUAUUUGGCGAUCUUGCCGGCCAGGGCCA .((((.((((.(((((.((...((((((.........------.)))))).)).((((((((((....)))).)).))))...((((......)))))))))...))))...)))). ( -42.40) >DroYak_CAF1 2163 108 + 1 CGGCCAGCUGGGGAUCCGUUUUGCCAUCGGGC---AG------CGGUGCCUCCAGCAGCGAACUGAACAGCUCCGUUUGCAGUGCCGUAUAUUUGGCCACCUUUCCGGCCAAAGCCA (((((.(((((((..((((..((((....)))---))------)))...))))))).((((((.((.....)).)))))).).))))....(((((((........))))))).... ( -48.70) >DroMoj_CAF1 18422 108 + 1 CGGCCAGUUGGGGAUCCGUUUUGCCGUUGGUC---GC------CGCCGGUUCCAGCAGGGAGCUGAACAGUUCCGUCUGCAAUGCCGUGUACUUGGCUAUCUUGCCGGCCAGGGCCA .((((....((.((((((......))..))))---.)------)((((((....((((((((((....))))))..))))...((((......))))......))))))...)))). ( -45.70) >DroPer_CAF1 2251 114 + 1 CGGUCAGCAUCGGAUCGAACUUGCCGCCGGGC---UGGCUCUGGGGCGGCUCCAGCAGCGAGCUGAACAGCUCCGUCUGCAGGGCCGUGUACUUGGCUAUCUUUCCGGCCAGGGCCA .(((((((.((((..((.......))))))))---)))))....((((((.((.((((((((((....)))).)).)))).))))).....(((((((........)))))))))). ( -51.70) >consensus CGGCCAGCUGGGGAUCCGUUUUGCCACCGGGC___AG______CGGCGGCUCCAGCAGCGAACUGAACAGCUCCGUCUGCAGUGCCGUAUACUUGGCUAUCUUGCCGGCCAGGGCCA ((((.......(((........(((((((..............)))))))))).((((.(((((....)))))...))))...))))....(((((((........))))))).... (-29.02 = -28.44 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:10 2006