Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,436,133 – 15,436,223 |
Length | 90 |
Max. P | 0.945301 |
Location | 15,436,133 – 15,436,223 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 89.02 |
Mean single sequence MFE | -36.77 |
Consensus MFE | -27.94 |
Energy contribution | -28.00 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -2.75 |
Structure conservation index | 0.76 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15436133 90 - 22224390 GUGGGUGGUGGUGGGAGGUGGUGAUAGGUGGUGGCUGUGGGUGUGGCGGCUACCGAAAGACGCCCAGCUCGGCGGAGAUCCGAAUCCGCA ((((((...(.((((..(.((((.....((((((((((.......)))))))))).....)))))..)))).)((....))..)))))). ( -36.30) >DroSec_CAF1 26147 87 - 1 GUGGGUGGUGGUGG---GUGGUGAUUGGUGGUGGCUGUGGGUGUGGCGGCUACCGAAAGACGCCCAGCUCGACGGAGAUCCGAAUCCGCA ((((((.(.(.(((---(((....((((((((.((..(....)..)).))))))))....)))))).).)..(((....))).)))))). ( -41.60) >DroEre_CAF1 24143 84 - 1 GUGGGUGGUGGUA------GGUGAUAGGUGGUGUCUGUGGGUGUGGCGGCUACCGAAAGACGCGCAGACCGCCGGAGAUCCGAAUCCACA ((((((..(((..------.......(((((..((((((.((.(..(((...)))..).)).)))))))))))......))).)))))). ( -34.66) >DroYak_CAF1 24116 84 - 1 GUGGGUGGUGGGA------GGUGAUAGGUGGUGGCUGUGGGUGUGGCGGCUACCGAAAGACGCCCAGAACGGCGGAGAUCCGAGUCCACA ((((((..((((.------(......((((((.((..(....)..)).))))))......).))))..))..(((....)))...)))). ( -34.50) >consensus GUGGGUGGUGGUA______GGUGAUAGGUGGUGGCUGUGGGUGUGGCGGCUACCGAAAGACGCCCAGAUCGGCGGAGAUCCGAAUCCACA ((((((.............((((.....((((((((((.......)))))))))).....))))........(((....))).)))))). (-27.94 = -28.00 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:09 2006