Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,418,862 – 15,418,978 |
Length | 116 |
Max. P | 0.719189 |
Location | 15,418,862 – 15,418,978 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 62.26 |
Mean single sequence MFE | -30.57 |
Consensus MFE | -8.07 |
Energy contribution | -8.65 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.58 |
Mean z-score | -2.21 |
Structure conservation index | 0.26 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719189 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15418862 116 + 22224390 CGGUGAGACAGGUCCUGAAUACGGCUCUGGCCGUCCUGGGCAUAGAACCGGUGGACUACGUAUAAAGAUAUGUUGAGCAUAUCUUCUAUAA--ACAAAAAACAAAAAAAAAAAACACA ..(((.....(((((......(((.(((((((......))).)))).)))..)))))...((((((((((((.....)))))))).)))).--.....................))). ( -31.20) >DroVir_CAF1 6344 91 + 1 CGGUGCGUGAGGUGCUGAAUGCAGCGUUGGCCCUGUUAGGAAUACAGCCCGUAGACUAUAUGUAAGGGCCUACG-AACGGG-CUU-----A--ACACCAA------------------ .((((..((((.(((((....))))((.((((((..(((...(((.....)))..)))......)))))).)).-....).-)))-----)--.))))..------------------ ( -30.20) >DroSec_CAF1 9169 102 + 1 CGGUGAGACAGGUCCUGAAUACGGCUCUGGCCGUCCUGGGCAUAGAACCGGUGGACUACGUAUAAAGAUAUGUUGACCAUAUCUUCUAUAC--GCAAA--------------AACACA ..(((.....(((((......(((.(((((((......))).)))).)))..))))).((((((((((((((.....)))))))).)))))--)....--------------..))). ( -35.00) >DroEre_CAF1 7068 96 + 1 CGGUAAGACAAGUUCUGAAUAAGGCUUUGGCAGUCCUGGGCAUAGAACCGGUGGAUUACGUAUAAAGGUAUGCUGAGCAAA-CUUUAAUACGACCUA--------------------- .(((...((..((((((......(((..((....))..))).))))))..))......(((((.(((((.(((...))).)-)))).))))))))..--------------------- ( -24.20) >DroYak_CAF1 7487 97 + 1 CGGUAAAACAGGUCCUGAAUAAGGCUUUGGCCGUCCUGGGCAUAGAGCCGGUGGACUACGUAUAAAGAUAUGCUGAGCAUAUCUUCAAUACGACCCA--------------------- .(((......(((((.......((((((((((......))).)))))))...))))).(((((.(((((((((...)))))))))..))))))))..--------------------- ( -37.00) >DroAna_CAF1 5976 89 + 1 CUGUGCGUCAGGUGAUGAACCAGGCUCUGUCCCUUCUGGGAAUCCUGCCCGUUGACUACGUUUAGGCAU-------------CCUUUAGGA--UCUAA--------------AAAACA ..(((.(((((((.....))).(((....((((....)))).....)))...)))))))((((.((.((-------------((....)))--)))..--------------.)))). ( -25.80) >consensus CGGUGAGACAGGUCCUGAAUAAGGCUCUGGCCGUCCUGGGCAUAGAACCGGUGGACUACGUAUAAAGAUAUGCUGAGCAUA_CUUCUAUAA__ACAAA____________________ ..........(((((.......(((....)))...((((........)))).))))).......(((.((((.....)))).)))................................. ( -8.07 = -8.65 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:54 2006