Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 22,118 – 22,238 |
Length | 120 |
Max. P | 0.922818 |
Location | 22,118 – 22,238 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.31 |
Mean single sequence MFE | -51.53 |
Consensus MFE | -45.38 |
Energy contribution | -46.00 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.08 |
Mean z-score | -2.14 |
Structure conservation index | 0.88 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922818 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 22118 120 + 22224390 CGAGGAGGAACGACUCGUCGCCUUCUGGCUGUGGUAGCCUAGGACGCACUUCCUCCACGCCUGGGCGAUCGUUGACUCCUGGACGAACCGGAGUUGGUGCCUCGCCAACUGGUAGUCUAA ..(((((...((((..(((((((...(((.((((......((((......))))))))))).))))))).)))).)))))((((..(((..((((((((...))))))))))).)))).. ( -51.00) >DroSec_CAF1 9438 120 + 1 CGAGGAGGAAUGACUCCUCGCCUUCUGGAGGUGGUAGCCUAGGACGCACUUCCUCCACGCCCGGGCGAUCAUUGACUCCUGGACGAACCGGAGUCGGUGCCUCGCCAACUGGUAGUCUAA (((((((......))))))).....((((((.(((.((.......))))).)))))).(((..(((((.((((((((((.((.....))))))))))))..)))))....)))....... ( -53.40) >DroSim_CAF1 9531 120 + 1 CGAGGAGGAACGACUCCUCGCCUUCUGGAGGUGGUAGCCUAGGACGCACUUCCUCCACGCCCGGGCGAUCAUUGACUCCUGGACGAACCGGAGUCGGUGCCUCGCCAACUGGUAGUCUAA (((((((......))))))).....((((((.(((.((.......))))).)))))).(((..(((((.((((((((((.((.....))))))))))))..)))))....)))....... ( -53.40) >DroYak_CAF1 4218 120 + 1 CAAGGAGGAACGACUCCUCGCCUUCUGGCGGUGGUAGCCUAGGACGCACUGCCUCCACGCCCGGGCGAUCAUUGACUCCUGGAAGAACUGGAGUUGGUGCCUCGCCAACAGGUAGUUUAA ..(((((......)))))((((....))))((((..((..((......))))..))))(((..(((((.(((..(((((.(......).)))))..)))..)))))....)))....... ( -48.30) >consensus CGAGGAGGAACGACUCCUCGCCUUCUGGAGGUGGUAGCCUAGGACGCACUUCCUCCACGCCCGGGCGAUCAUUGACUCCUGGACGAACCGGAGUCGGUGCCUCGCCAACUGGUAGUCUAA (((((((......))))))).....((((((..((.((.......))))..)))))).(((..(((((.((((((((((.((.....))))))))))))..)))))....)))....... (-45.38 = -46.00 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:00 2006