Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,407,752 – 15,407,844 |
Length | 92 |
Max. P | 0.649886 |
Location | 15,407,752 – 15,407,844 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.26 |
Mean single sequence MFE | -34.15 |
Consensus MFE | -15.54 |
Energy contribution | -15.02 |
Covariance contribution | -0.53 |
Combinations/Pair | 1.46 |
Mean z-score | -1.60 |
Structure conservation index | 0.46 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15407752 92 - 22224390 AAUCCCUACUGGAAGAGCAAUGGCACGGGUCUGCCCGGUUUCCAGAAGCCACAGGACGACGAU---------GAACGG------CAG----------GCCAAGCC---GCAUUCCAGCAG .....((.((((((..((...(((...((((((((.(((((....)))))...(.....)...---------....))------)))----------)))..)))---)).)))))).)) ( -34.30) >DroVir_CAF1 5939 111 - 1 AAUCCCUAUUGGAAAAGCAAUGGCACCGGCCUGCCGGGCUUUCAAAAGCCCAAAGCCGACGAA---------GAUGAAGAGGAUGCGCACCCAGCCAGCCACGCCAGGGCAAUACAACAG ..(((.....)))...((..((((..((((.....((((((....))))))...)))).....---------........((.((.((.....)))).))..))))..)).......... ( -33.10) >DroGri_CAF1 5987 99 - 1 AAUCCCUACUGGAAAAGCAACGGCACUGGCCUGCCCGGCUUUCAGCGACCCAAAGCUGACGAU---------GAGCCG------GAGUACCCAGAUAGGC----GGCUGCAA--CAACAG ..((((((((((.........(((....)))(((((((((((((((........)))))....---------))))))------).))).)))).)))).----))(((...--...))) ( -35.70) >DroEre_CAF1 2093 92 - 1 AAUCCCUACUGGAAGAGCAAUGGCACGGGUCUGCCCGGCUUCCAGAAGCCGCAGGACGACGAU---------GAGCGG------CAG----------GCCAAGCC---GCAUUCCAUCAG .........(((((..((...(((...((((((((.(((((....)))))((...........---------..))))------)))----------)))..)))---)).))))).... ( -34.92) >DroYak_CAF1 1497 92 - 1 AAUCCAUACUGGAAGAGCAAUGGCACGGGUCUGCCCGGCUUCCAGAAGCCACAGGAUGACGAU---------GAGCGG------CAG----------GACAAGCC---GCUUACCACCAG .((((...(((((((.((....)).((((....)))).)))))))..(...).))))...(.(---------((((((------(..----------.....)))---))))).)..... ( -33.90) >DroAna_CAF1 1945 98 - 1 AAUCCUUAUUGGAAGAGUAAUGGCACGGGCCUGCCCGGCUUCCAGAAGCCACAGGACGAUGACGACUCCGGGGAGCGG------GGU----------GCAAAGCA---GCACUCG---AA ..(((.....)))...((..((....(((....)))(((((....))))).))..)).....((.(((....)))))(------(((----------((......---)))))).---.. ( -33.00) >consensus AAUCCCUACUGGAAGAGCAAUGGCACGGGCCUGCCCGGCUUCCAGAAGCCACAGGACGACGAU_________GAGCGG______CAG__________GCCAAGCC___GCAUUCCAACAG ........(((((((.((....)).((((....)))).)))))))........................................................................... (-15.54 = -15.02 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:51 2006