Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,402,143 – 15,402,249 |
Length | 106 |
Max. P | 0.586672 |
Location | 15,402,143 – 15,402,249 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.44 |
Mean single sequence MFE | -31.04 |
Consensus MFE | -16.34 |
Energy contribution | -17.02 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.22 |
Mean z-score | -2.54 |
Structure conservation index | 0.53 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586672 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15402143 106 + 22224390 AUGGAUGGGGAUGGAGAUGAAUAUGGCAUAGCCAAUGGCCACGAAAUUAGCCAUUCACCAUUGAAUGGUAUGGAA--------------AAUAGUGGUAUGUUUAGAAAGAACCAUCACA ...(((((.........((((((((((...)))....(((((.......((((((((....))))))))......--------------....)))))))))))).......)))))... ( -28.82) >DroEre_CAF1 39315 120 + 1 AUGGAUGGGGAUGGCUAUGAAUAUGGCAUGGCUAUUGGCCACCAAAUUAGCCAUUCACUAUUGACUGAUGUUGAACAGUAAAUAAGGCUAAUAGAGGUAUUUUUAGAAGGAACCCCCACA .....((((((((((((((.......))))))))).....(((..((((((((((.(((.(..((....))..)..))).)))..)))))))...)))...............))))).. ( -32.60) >DroYak_CAF1 42491 120 + 1 AUGAAUGGGGAUGGCUAUGAAUAUGACAUGGCCAUUGGCCACAAAAUUACCCAUUCACUAUUGAGUGAUGUUGAAAAGUAAAUACGGCUAAUAGAGGUAUUUUUAGAAAGAACUUACACA .((((((((((((((((((.......))))))))))(....).......))))))))(((((.(((..((((........))))..))))))))..(((..(((.....)))..)))... ( -31.70) >consensus AUGGAUGGGGAUGGCUAUGAAUAUGGCAUGGCCAUUGGCCACAAAAUUAGCCAUUCACUAUUGAAUGAUGUUGAA_AGUAAAUA_GGCUAAUAGAGGUAUUUUUAGAAAGAACCAACACA .(((((((.((((((((((.......))))))))))(....)........)))))))....................................(((((.............))))).... (-16.34 = -17.02 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:48 2006