Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,394,850 – 15,395,050 |
Length | 200 |
Max. P | 0.802019 |
Location | 15,394,850 – 15,394,970 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.65 |
Mean single sequence MFE | -26.14 |
Consensus MFE | -20.27 |
Energy contribution | -21.90 |
Covariance contribution | 1.63 |
Combinations/Pair | 1.08 |
Mean z-score | -1.53 |
Structure conservation index | 0.78 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15394850 120 - 22224390 AACAAGCCCAAAAAAAAAAAAAAAAAAACAACAAAAUAGGGACUCCCGUCCCAAGGAACCGGAUACCAAGGAUAAUUGCCAGGCCAUCAGGUGGGCUCACAUUUUUUGGGUUGCGCCAAA ....(((((((((((.......................(((((....)))))...((.((.........))......(((..(((....))).)))))...)))))))))))........ ( -30.30) >DroSec_CAF1 41247 110 - 1 AACAAGCCCCAAAAAAAA----AAAA------AAAAUAGGGACUACCGUUCAAAGGAACCGGAUGCCAAGGAUAAUUGCCAGGCCAUCAGGUGGGCUCACAUUUUUUGGGUUGCGCCAAA .....(((((((((((..----....------......(((.(((((((((....))))..((((((..((.......)).)).)))).))))).)))...)))))))))..))...... ( -27.06) >DroEre_CAF1 32159 97 - 1 AACAAGCCCCGAA--AAA---------------------GGACUGCCGUUCAAAGGAACCGGAUACCAAGGAUAAUUGCCAGGCCAUCAGGUGGGCUCACAUUUUUUGGGUUGCGCCAAA .....((((((((--(((---------------------((....((((((....))).)))...))..........(((..(((....))).))).....)))))))))..))...... ( -26.20) >DroYak_CAF1 23865 99 - 1 AACAAGCCCCAAAAAAAA---------------------GGACUCUCGCACAAAGGAACCGGAUACCAAGGAUAAUUGCCAGGCCAUCAGGUGGGCUAACAUUUUUUGGGUUGCGCCAAA .....(((((((((((..---------------------((..(((........))).)).................(((..(((....))).))).....)))))))))..))...... ( -21.00) >consensus AACAAGCCCCAAAAAAAA_____________________GGACUCCCGUUCAAAGGAACCGGAUACCAAGGAUAAUUGCCAGGCCAUCAGGUGGGCUCACAUUUUUUGGGUUGCGCCAAA .....(((((((((((.......................((..(((.((((....)))).)))..))..........(((..(((....))).))).....)))))))))..))...... (-20.27 = -21.90 + 1.63)
Location | 15,394,930 – 15,395,050 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.13 |
Mean single sequence MFE | -30.20 |
Consensus MFE | -27.00 |
Energy contribution | -27.12 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.64 |
Structure conservation index | 0.89 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802019 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15394930 120 - 22224390 CGCUUGUGGUUUAAUUUUUCAUGCUAAUGAAGGGGGCAUGUUAAUUGUUUGUGUUGCAUUCGCCGCCUGGCAGGUGGCCAAACAAGCCCAAAAAAAAAAAAAAAAAAACAACAAAAUAGG ...((((.((((...(((((((....)))))))((((.((((....(..((.....))..)((((((.....))))))..)))).))))................)))).))))...... ( -31.50) >DroSec_CAF1 41327 110 - 1 CGCUUGUGGGUUAAUUUUUCAUGCUAAUGAAGGGGGCAUGUUAAUUGUUUGUGUUGCAUUCGCCGCCUAGCAGGUGGCCAAACAAGCCCCAAAAAAAA----AAAA------AAAAUAGG ..(((((.........((((((....))))))(((((.((((....(..((.....))..)((((((.....))))))..)))).)))))........----....------...))))) ( -31.10) >DroEre_CAF1 32239 97 - 1 CGCUUGUGGGUUAAUUUGUCAUGCUAAUGAAGGGGGCAUGUUAAUUGUUUGUGUUGCAUUCGCCGCCUGGCAGGUGGCCAAACAAGCCCCGAA--AAA---------------------G ...(((.(((((...(((.((((((.........)))))).))).((((((.((..(....(((....)))..)..)))))))))))))))).--...---------------------. ( -29.20) >DroYak_CAF1 23945 99 - 1 CGCUUGUGGGUUAAUUUUUCAUGCUAAUGAAGGGGGCAUGUUAAUUGUUUGUGUUGCAUUUGCCGCCUGGCAGGUGGUCAAACAAGCCCCAAAAAAAA---------------------G ...(((.(((((...((..((((((.........))))))..)).((((((.....((((((((....))))))))..))))))))))))))......---------------------. ( -29.00) >consensus CGCUUGUGGGUUAAUUUUUCAUGCUAAUGAAGGGGGCAUGUUAAUUGUUUGUGUUGCAUUCGCCGCCUGGCAGGUGGCCAAACAAGCCCCAAAAAAAA_____________________G ................((((((....))))))(((((.((((....(..((.....))..)((((((.....))))))..)))).))))).............................. (-27.00 = -27.12 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:37 2006