Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,379,305 – 15,379,421 |
Length | 116 |
Max. P | 0.700975 |
Location | 15,379,305 – 15,379,421 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.16 |
Mean single sequence MFE | -18.12 |
Consensus MFE | -14.80 |
Energy contribution | -14.80 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.82 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15379305 116 + 22224390 ACCCCCCCUCUCCACACAAAACACCAAUUGUAAGGUGUAAAAUAAACUGUGUAC----CCGGUCAAUAGCUCUCUAUAAUUAUCAAGAAAAAAUUAAUUAUGGAAGAAAAACACUGAGCA ......((.....(((((..(((((........))))).........)))))..----..))......((((((((((((((............))))))))))((.......)))))). ( -19.00) >DroSim_CAF1 14665 115 + 1 ACUCCCCC-CUCAACUUGCCACACCAAUUGUAAGGUGUAAAAUAAACUGUGUAC----CCGGUCAAUAGCUCUCUAUAAUUAUCAAGAAAAAAUUAAUUAUGGAAGAAAAACACUGAGCA ........-((((....((.(((((........))))).......((((.....----.)))).....))((((((((((((............))))))))).))).......)))).. ( -19.10) >DroEre_CAF1 19339 98 + 1 ------------------CCCCCCCAAUUGUAAGGUGUAAAAUAAACUGUGUAC----CCGGUCAAUAGCUCUCUAUAAUUAUCAAGAAAAAAUUAAUUAUGGUAGAAAAACACUGCGCA ------------------..........(((..(((((.......((((.....----.)))).......((((((((((((............))))))))).)))...)))))..))) ( -15.90) >DroYak_CAF1 11407 102 + 1 ------------------CCUCCCCAAUUGUAAGGUGUAAAAUAAACUGUGUACCCACCCGGUCAAUAGCUCUCUAUAAUUAUCAAGAAAAAAUUAAUUAUGGAAGAAAAACACUGAGCA ------------------..........(((..(((((........((((..(((.....)))..)))).((((((((((((............))))))))).)))...)))))..))) ( -18.50) >consensus __________________CCACACCAAUUGUAAGGUGUAAAAUAAACUGUGUAC____CCGGUCAAUAGCUCUCUAUAAUUAUCAAGAAAAAAUUAAUUAUGGAAGAAAAACACUGAGCA ............................(((..(((((.......((((..........)))).......((((((((((((............))))))))).)))...)))))..))) (-14.80 = -14.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:01 2006