Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,373,738 – 15,373,858 |
Length | 120 |
Max. P | 0.691335 |
Location | 15,373,738 – 15,373,858 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -46.82 |
Consensus MFE | -43.72 |
Energy contribution | -43.96 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.21 |
Structure conservation index | 0.93 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15373738 120 + 22224390 UAUCGAGUUCGCUGUGCCGCCGGUCGCUGCAGUUUCAAUUGCAUCAUGAAUGCCUGCAACAAGUGGCCGGACAUAAUAACAGCUGGCGGCGAGUGGAGCGCUGCCGCCUCAUGGCUGCCA ..........(((((....(((((((((((((.((((.........))))...))))....)))))))))........))))).((((((..(((..(((....)))..))).)))))). ( -46.80) >DroSec_CAF1 15735 120 + 1 AAUCGAGUUCGCUGUGCCGCCGGUCGCUGCAGUUUCAGUUGCAUCAUGAAUGCCUGCAACAAGUGCCCGGACAUAAUAACAGCUGGCGGCGAGUGGAGCGCUGCCGCCUCAUGGCUGCCA ..........(((((....((((.((((...(((.(((..((((.....))))))).))).)))).))))........))))).((((((..(((..(((....)))..))).)))))). ( -44.60) >DroSim_CAF1 9059 120 + 1 AAUCGAGUUCGCUGUGCCGCCGGUCGCUGCAGUUUCAGUUGCAUCAUGAAUGCCUGCAACAAGUGGCCGGACAUAAUAGCAGCUGGCGGCGAGUGGAGCGCUGCCGCCUCAUGGCUGCCA .....((((.(((((....(((((((((...(((.(((..((((.....))))))).))).))))))))).....)))))))))((((((..(((..(((....)))..))).)))))). ( -51.50) >DroEre_CAF1 13981 120 + 1 AAUCGAGUUCGCUGUGCCGCCGGUCGCUGCAGCUUCAGUUGCAUCAUGAAUGCCUGCAACAAGUGGCCGGACAUAAUAACAGCUGGCGGCGAGUGGAACGCUGCCGCCUCAUGGCUGCCA ..........(((((....((((((((((((((....)))))........((....))...)))))))))........))))).(((((((.......)))))))(((....)))..... ( -46.40) >DroYak_CAF1 5798 120 + 1 AAUUGAGUUUGCUGUGCCGCCGGUCGCCGCAGCUUCAGUUGCAUCAUGAAUGCCUGCAACAAGUGGCCGGACAUAAUAACAGCUGGCGGCGAGUGGAACGCUGCCGCCUCAUGGCUGCCA ..........(((((....((((((((.(((((....)))))........((....))....))))))))........))))).(((((((.......)))))))(((....)))..... ( -44.80) >consensus AAUCGAGUUCGCUGUGCCGCCGGUCGCUGCAGUUUCAGUUGCAUCAUGAAUGCCUGCAACAAGUGGCCGGACAUAAUAACAGCUGGCGGCGAGUGGAGCGCUGCCGCCUCAUGGCUGCCA ..........(((((....(((((((((((((.((((.........))))...))))....)))))))))........))))).(((((((.......)))))))(((....)))..... (-43.72 = -43.96 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:52 2006