Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,368,335 – 15,368,427 |
Length | 92 |
Max. P | 0.600593 |
Location | 15,368,335 – 15,368,427 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 77.60 |
Mean single sequence MFE | -21.93 |
Consensus MFE | -15.10 |
Energy contribution | -14.73 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.12 |
Mean z-score | -1.57 |
Structure conservation index | 0.69 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.600593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15368335 92 + 22224390 CUCG---------------------CAUCCUGCCUCCUUCCUCAUCUCCUCAUAUGCAAAUGCAUGCAAAUCAGGAUACAAGCGGCUUAGUCCUGCCCGCGACUCUGCGACAU .(((---------------------((...................((((.((.((((......)))).)).)))).....(((((........).)))).....)))))... ( -21.20) >DroSec_CAF1 1168 106 + 1 CUCGCAUACCGCAUCCCG-------CAUCCUGCCUCCUCCCUCAUCUCCUCAUAUGCAAAUGCAUGCAAAUCAGGAUACAAACGGCUUAGUCCUGCCCGCGACACUGCGACAU .(((((...(((.....(-------.((((((....................(((((....))))).....)))))).)....(((........))).)))....)))))... ( -22.91) >DroSim_CAF1 3675 113 + 1 CUCGCAUACCGCAUCCCGCAUUCCGCAUCCUGCCUCCUCCCUCAUCUCCUCAUAUGCAAAUGCAUGCAAAUCAGGAUACAAACGGCUUAGUCCUGCCCGCGACACUGCGACAU .(((((....((.....))....(((....................((((.((.((((......)))).)).)))).......(((........))).)))....)))))... ( -24.30) >DroEre_CAF1 8321 84 + 1 --------------------------GACCUGUUC---CCCCCAGCUCCUCAUAUGUAAAUGCAUGCAAAUCAGGAUGCGAACGGCUUAGUCCUGUCCGCGACUCUGCGACAU --------------------------(((((((((---......((((((.((.((((......)))).)).)))).))))))))....))).((((.(((....))))))). ( -19.30) >consensus CUCG_____________________CAUCCUGCCUCCUCCCUCAUCUCCUCAUAUGCAAAUGCAUGCAAAUCAGGAUACAAACGGCUUAGUCCUGCCCGCGACACUGCGACAU ..............................................((((.((.((((......)))).)).)))).......(((........)))((((....)))).... (-15.10 = -14.73 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:45 2006