Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,339,090 – 15,339,210 |
Length | 120 |
Max. P | 0.566681 |
Location | 15,339,090 – 15,339,210 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.94 |
Mean single sequence MFE | -37.40 |
Consensus MFE | -24.13 |
Energy contribution | -24.70 |
Covariance contribution | 0.57 |
Combinations/Pair | 1.17 |
Mean z-score | -2.50 |
Structure conservation index | 0.65 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.566681 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15339090 120 + 22224390 GAUAUCCAGUCCAGAAAAAACUCCCGUAGAUAGCGAGCUUCUGGCCAAAAUGGAGCAAAAGGAGCAGGAAUACUUACAAUUGCAGGAGCAGUUGGCCUUCGCCAAAACGGAACUGGACAA ........((((((.........((((.....((((((((((.(((......).))...))))))(((........(((((((....))))))).)))))))....))))..)))))).. ( -35.30) >DroSec_CAF1 43694 120 + 1 GAUAUCCAGUCCAGAAAAAACUGCCCUGGAUAGCGAGCUUCUGGCCAAAAUGGAGCAAAAGGAGCAGGAACACUUCCAAUUGCAGGAGCAGUUGGCCUUCGCCAAAACGGAACUAGAAAA ..(((((((..(((......)))..)))))))((((((((((.(((......).))...))))))(((.......((((((((....))))))))))))))).................. ( -38.31) >DroEre_CAF1 19419 120 + 1 GAAGUCUAGUCCGGAAAAAUCUCCCCUGGACAGCGAGCUACUUGCUAAAAUAGAGCAGAAGGAGCAGGAAUACUUGCUGUUGCAGGAGCAGUUGGCCUCCGCCAAAACGGAAGUGGCCAA ....((((((((((...........))))))((((((...))))))....))))((((....((((((....)))))).))))........((((((((((......))))...)))))) ( -38.60) >consensus GAUAUCCAGUCCAGAAAAAACUCCCCUGGAUAGCGAGCUUCUGGCCAAAAUGGAGCAAAAGGAGCAGGAAUACUUACAAUUGCAGGAGCAGUUGGCCUUCGCCAAAACGGAACUGGACAA ....(((.((((((...........)))))).((((((((((.(((......).))...))))))...........(((((((....)))))))....))))......)))......... (-24.13 = -24.70 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:10 2006