Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,332,115 – 15,332,231 |
Length | 116 |
Max. P | 0.619239 |
Location | 15,332,115 – 15,332,231 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.19 |
Mean single sequence MFE | -34.38 |
Consensus MFE | -26.62 |
Energy contribution | -28.38 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.03 |
Mean z-score | -1.56 |
Structure conservation index | 0.77 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15332115 116 - 22224390 AGAUAAAGACCGCGCUGGGUGGGGAGAUAGCAGCGACGGGGUUAAUGGAUAAAAUGGUAAGACAUUUAUCAUGACAGCCGUACAUAACCUCACUCGGCGGUGGGAUGGAUGU----GGGU ..((..(..(((((((((((((((.(....)....((((.((((...((((((.((......)))))))).))))..))))......))))))))))).))))..)..))..----.... ( -37.10) >DroSec_CAF1 36788 116 - 1 AGAUAAAGACCGCGCUGGGUGGGGAGAUAUCAGCGACGGGGUUAAUGGAUAAAAUGGUAAGACAUUUAUCAUGACAGCCGUGCAUAACCUCACUCGGCGGUGGGAUGGAUGU----GGGU ..((..(..(((((((((((((((.(....).((.((((.((((...((((((.((......)))))))).))))..))))))....))))))))))).))))..)..))..----.... ( -40.90) >DroSim_CAF1 13481 119 - 1 AGAUAAAGACCGCGCUGGGUGGGUAGAUAUCAGCGACGGGGUUAAUGGAUAAAAUGGUAAGACAUUUAUCAUGACAGCCGUGCAUAACCUCACUCGGCGGUGGGAUGGAUGU-GGUGGGU ..((..(..(((((((((((((((.(....).((.((((.((((...((((((.((......)))))))).))))..))))))...))).)))))))).))))..)..))..-....... ( -37.90) >DroEre_CAF1 12533 117 - 1 AGAUAAAAACCGGGCUGUAUGGGGAGAUAGCGCCGACGGGUUUAAUGGAUAAAAUGGAAAGACAUUUAUCAUGGCAGCCGUACAUAACCUCACUCGA---UGGGAUGGAUGGACGUGGAU .........(((((((((.(((.(......).)))............((((((.((......))))))))...))))))((.(((...((((.....---))))....))).)).))).. ( -25.10) >DroYak_CAF1 12996 114 - 1 AGAUAAAGACCGAUCUGGGUGGGGAGAUAGCACCGACGGGGUUAAUGGAUAAAAUGGAAAGACAUUUAUCAUGGCAGCCGUACAUAACCUCACUCGG---UGAGUUGGAUGG---UGGGU .........(((((((((((((((...((((.((....))))))(((((((((.((......))))))))((((...)))).)))..))))))))))---...)))))....---..... ( -30.90) >consensus AGAUAAAGACCGCGCUGGGUGGGGAGAUAGCAGCGACGGGGUUAAUGGAUAAAAUGGUAAGACAUUUAUCAUGACAGCCGUACAUAACCUCACUCGGCGGUGGGAUGGAUGU___UGGGU .........(((((((((((((((.(....)....((((.((((...((((((.((......)))))))).))))..))))......))))))))))).))))................. (-26.62 = -28.38 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:00 2006