Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,319,914 – 15,320,027 |
Length | 113 |
Max. P | 0.530132 |
Location | 15,319,914 – 15,320,027 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.07 |
Mean single sequence MFE | -37.55 |
Consensus MFE | -24.06 |
Energy contribution | -24.90 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.27 |
Mean z-score | -1.65 |
Structure conservation index | 0.64 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15319914 113 + 22224390 U----CGCAGAA---CCCAUCCAGCUGCCCAGUUACUACAAUCCGAGCAUCAUCAAUGCCAAUCGCUAUGCGGAGCAGCAGCAGAAGCGCAAGCUACUGUGGGGCUCCAAGAAGAGCGAG (----(......---(((.....(((((((..............(.((((.....)))))....((...)))).))))).((((.(((....))).)))))))((((......)))))). ( -37.50) >DroPse_CAF1 847 117 + 1 UCGCCCGUGAAG---CCCAUCCAGCUGCCGAGCUACUACAAUCCGGGCAUCAUCAAUGCCAAUCGGUACGCGGAGCAGCAGCAGAAGCGCAAGUUGCUGUGGGGCUCAAAGAAGAGUGAU ((((.(.(((.(---(((.(((.((((((((..............(((((.....)))))..)))))).)))))((((((((..........)))))))).))))))).....).)))). ( -42.49) >DroEre_CAF1 884 113 + 1 U----CGCAGAA---CCCAUCCAGCUGCCCAGUUACUAUAAUCCGGGCAUCAUCAAUGCUAAUCGCUAUGCGGAGCAGCAGCAGAAGCGCAAGCUACUGUGGGGCUCUAAGAAAAGCGAG (----((((((.---(((.....(((((((...............(((((.....)))))....((...)))).))))).((((.(((....))).)))).))).))).......)))). ( -38.41) >DroWil_CAF1 4300 113 + 1 C----AGCAGCC---CCCAUCCAAUUACCCAGCUAUUACAAUCCGGGCAUUAUUAAUGCCAAUCGGUAUGCCGAACAGCAACAGAAACGCAAGUUAAUCUGGGGCGCCAAGAAGAGUGAG .----.((.(((---(...............(((...........(((((.....)))))..((((....))))..)))..(((((((....)))..))))))))))............. ( -31.40) >DroAna_CAF1 18449 116 + 1 C----CUUGGAAUCCCCGAUCCAGUUGCCCAGCUACUAUAAUCCCGGAAUCAUAAACGCCAAUCGCUAUGCCGAGCAGCAGCAGAAGCGCAAGCUGCUAUGGGGCUCCAAGAAGAACGAG .----((((((..(((((.....(((((...(((..........(((...((((...((.....)))))))))))).)))))((.(((....))).)).))))).))))))......... ( -33.00) >DroPer_CAF1 838 117 + 1 UCGCCCGUGAAG---CCCAUCCAGCUGCCGAGCUACUACAAUCCGGGCAUCAUCAAUGCCAAUCGGUACGCGGAGCAGCAGCAGAAGCGCAAGUUGCUGUGGGGCUCAAAGAAGAGUGAU ((((.(.(((.(---(((.(((.((((((((..............(((((.....)))))..)))))).)))))((((((((..........)))))))).))))))).....).)))). ( -42.49) >consensus U____CGCAGAA___CCCAUCCAGCUGCCCAGCUACUACAAUCCGGGCAUCAUCAAUGCCAAUCGCUAUGCGGAGCAGCAGCAGAAGCGCAAGCUACUGUGGGGCUCCAAGAAGAGCGAG ...............(((.....(((((...((............(((((.....))))).........))...))))).((((.(((....))).)))))))((((......))))... (-24.06 = -24.90 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:52 2006