Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,662,394 – 1,662,507 |
Length | 113 |
Max. P | 0.895693 |
Location | 1,662,394 – 1,662,507 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.83 |
Mean single sequence MFE | -40.02 |
Consensus MFE | -24.98 |
Energy contribution | -26.60 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.11 |
Mean z-score | -2.40 |
Structure conservation index | 0.62 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1662394 113 + 22224390 UUCGAGUGGAUGUGUCGCGGCAACUUAAGUGUAUCAUU------UGCUUGGCCAGAAUCA-GGCGGCAAUUGAUGGGGCUUCAUUGAAGCCGCGAAAGUGUUGCGGAAUUAAGUUACUCG ..(((((((..((..(((((((.(((..((.(((((.(------((((..(((.......-)))))))).))))).((((((...))))))))..))))))))))..))....))))))) ( -42.00) >DroSim_CAF1 405 117 + 1 UUGGAGUGGAUGUGUCGCGGCAACUUAAGUGUAUCAUUGCUUGGUGCUUGGCCAGCACCA-GGCGGCAAUUGAUGGGGCUUCAUUGAAGCCGCGAAAGUGUUGCGAAAUUAAGUUACU-- ....(((((..((.((((((((.(((..((.(((((((((((((((((.....)))))))-)))))....))))).((((((...))))))))..))))))))))).))....)))))-- ( -44.60) >DroEre_CAF1 8120 101 + 1 UUCGAGUGGCUGUGUCG------------UGUAUCUUU------UGCUCGGCCAGCAGCAAAGCGGCCAUUGAUGGGGUUUCACUGAAGCCGCGAAAGUGUUGCGAA-CCAACUUACUCG ..(((((((.((..(((------------((...((((------(((..((((.((......))))))........((((((...)))))))))))))...))))).-.)).).)))))) ( -37.20) >DroYak_CAF1 567 113 + 1 UUCGAGUGGAUGUGUCGCGGCAACUUAAGUGUAUCAUU------UGCUUGGCCAGCAGCA-AGCGGCAAUUGAUGGGGUUUUAUUGAAGCCGCGAAAGUGGUGCGAAAUGAAGUUACUCG ..(((((((.....((((..(((...((.(.(((((.(------((((..((.....)).-...))))).))))).).))...)))..(((((....))))))))).......))))))) ( -36.30) >consensus UUCGAGUGGAUGUGUCGCGGCAACUUAAGUGUAUCAUU______UGCUUGGCCAGCAGCA_AGCGGCAAUUGAUGGGGCUUCAUUGAAGCCGCGAAAGUGUUGCGAAAUUAAGUUACUCG ..(((((((.....((((((((............................(((.((......)))))......((.((((((...)))))).))....)))))))).......))))))) (-24.98 = -26.60 + 1.62)
Location | 1,662,394 – 1,662,507 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.83 |
Mean single sequence MFE | -29.39 |
Consensus MFE | -16.20 |
Energy contribution | -17.52 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.05 |
Mean z-score | -2.22 |
Structure conservation index | 0.55 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1662394 113 - 22224390 CGAGUAACUUAAUUCCGCAACACUUUCGCGGCUUCAAUGAAGCCCCAUCAAUUGCCGCC-UGAUUCUGGCCAAGCA------AAUGAUACACUUAAGUUGCCGCGACACAUCCACUCGAA (((((........((((((((......(.((((((...)))))).)((((.((((.(((-.......)))...)))------).))))........)))).)).)).......))))).. ( -30.56) >DroSim_CAF1 405 117 - 1 --AGUAACUUAAUUUCGCAACACUUUCGCGGCUUCAAUGAAGCCCCAUCAAUUGCCGCC-UGGUGCUGGCCAAGCACCAAGCAAUGAUACACUUAAGUUGCCGCGACACAUCCACUCCAA --.(((((((((....((((.......(.((((((...)))))))......)))).((.-(((((((.....))))))).))..........)))))))))................... ( -33.12) >DroEre_CAF1 8120 101 - 1 CGAGUAAGUUGG-UUCGCAACACUUUCGCGGCUUCAGUGAAACCCCAUCAAUGGCCGCUUUGCUGCUGGCCGAGCA------AAAGAUACA------------CGACACAGCCACUCGAA (((((..((((.-.(((.....((((..(((((.(((..((...(((....)))....))..)))..)))))....------)))).....------------)))..)))).))))).. ( -29.90) >DroYak_CAF1 567 113 - 1 CGAGUAACUUCAUUUCGCACCACUUUCGCGGCUUCAAUAAAACCCCAUCAAUUGCCGCU-UGCUGCUGGCCAAGCA------AAUGAUACACUUAAGUUGCCGCGACACAUCCACUCGAA (((((.........((((.(.((((..(((((.....................)))))(-((((........))))------)...........)))).)..)))).......))))).. ( -23.99) >consensus CGAGUAACUUAAUUUCGCAACACUUUCGCGGCUUCAAUGAAACCCCAUCAAUUGCCGCC_UGCUGCUGGCCAAGCA______AAUGAUACACUUAAGUUGCCGCGACACAUCCACUCGAA (((((.........((((.........(((((....(((......))).....))))).....((((.....))))..........................)))).......))))).. (-16.20 = -17.52 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:44 2006