Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,243,531 – 15,243,626 |
Length | 95 |
Max. P | 0.788884 |
Location | 15,243,531 – 15,243,626 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.11 |
Mean single sequence MFE | -22.95 |
Consensus MFE | -11.10 |
Energy contribution | -11.62 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.29 |
Mean z-score | -2.12 |
Structure conservation index | 0.48 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15243531 95 + 22224390 CAAAAGCAAGAAAAAUUUGAAACCACAGUCUCAACAUUUACUUGUAAUCGACUGCCUGGACAGUGCGUUUCAAAACUGUAAGGCAAGCGUA--CGC----------U- .....(((((.(((..((((.((....)).))))..))).)))))...((..(((((..(((((..........))))).)))))..))..--...----------.- ( -22.00) >DroPse_CAF1 69239 94 + 1 CAAAAACAU-AAAAAGUUGAGGCCGCAGUCUCAACAUAU-------------UACACAUACAGUGCGUUUGAGCGCUGUAAGGCAACACUGGGUGCCAGUGCACCCUA .........-.....((((((((....))))))))....-------------......((((((((......)))))))).(....)...((((((....)))))).. ( -35.30) >DroSec_CAF1 63821 95 + 1 CAAAAGCAAGAAAAAUUUGAAACCACAGUCUCAACAUUUACUUGUAAUCGACUGCCUGGACAGUGCGUUUCAAAACUGUAAGGCAAGCGUA--CAC----------U- .....(((((.(((..((((.((....)).))))..))).)))))...((..(((((..(((((..........))))).)))))..))..--...----------.- ( -22.00) >DroSim_CAF1 72656 95 + 1 CAAAAGCAAGAAAAAUUUGAAACCACAGUCUCAACAUUUACUUGUAAUCGACUGCCUGGACAGUGCGUUUCAAAACUGUAAGGCAAGCGUG--CAC----------U- .....(((((.(((..((((.((....)).))))..))).)))))...((..(((((..(((((..........))))).)))))..))..--...----------.- ( -22.00) >DroEre_CAF1 64564 95 + 1 CAAAAGCAAGAAAAUUUUGAAACCACAGUCUCAACAUUUACUUGUAAUCGACUGCUUGGACGGUGCGUUUAAAAGUUGUAGGGCAAACCCA--UAA----------U- .....(((((.((((.((((.((....)).)))).)))).)))))...(((((..(((((((...))))))).)))))..(((....))).--...----------.- ( -21.70) >DroYak_CAF1 64201 95 + 1 CAAAAGCAAGAAAAACUUGAAACCACAGUCUCAACAUUUACUUAUAAUCGACUGCCCGGACGGUGCGUUUAAAAGUUGUGGAGCAAACGUA--UAA----------U- ......((((.....))))...(((((((....))....((((.(((.((((((......)))).)).))).)))))))))..........--...----------.- ( -14.70) >consensus CAAAAGCAAGAAAAAUUUGAAACCACAGUCUCAACAUUUACUUGUAAUCGACUGCCUGGACAGUGCGUUUCAAAACUGUAAGGCAAGCGUA__CAC__________U_ .....(((((.(((..((((.((....)).))))..))).))))).......(((((..(((((..........))))).)))))....................... (-11.10 = -11.62 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:29 2006