Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,240,374 – 15,240,468 |
Length | 94 |
Max. P | 0.929138 |
Location | 15,240,374 – 15,240,468 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 76.47 |
Mean single sequence MFE | -24.94 |
Consensus MFE | -15.94 |
Energy contribution | -16.74 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.24 |
Mean z-score | -1.55 |
Structure conservation index | 0.64 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15240374 94 + 22224390 AACAGUUGG----AAUGUU-----CA-UUAC-----AUAUCUA-UCA--AGUGAGAAUACAGUGUUGCAAAGAAAGUGGGUU-UGAAGCCCCAUGCCUACGUCACUGUAUCUU ....(.(((----(((((.-----..-..))-----)).))))-.).--...((((.(((((((...........((((((.-((......)).))))))..))))))))))) ( -22.52) >DroSec_CAF1 60714 93 + 1 CACAGUUGG----AAUGUU-----CA-UUAC-----AUAUCCA-UCA--AGUGAGAAUACAGUGCUGCA-AGGAAGUGGGUU-UGAAGCCCCCUGCCUACGUCACUGUAUCUU (((...(((----(((((.-----..-..))-----)).))))-...--.)))(((.(((((((.((..-(((.((.((((.-....)))).)).))).)).)))))))))). ( -29.40) >DroSim_CAF1 69532 93 + 1 CACAGUUGG----AAUGUU-----CA-UUAC-----AUAUCCA-UCA--AGUGGGAAUACAGUGUUGAA-AGGAAGUGGGCU-UGAAGCCCCCUGCCUACGUCACUGUAUCUU (((...(((----(((((.-----..-..))-----)).))))-...--.)))(((.(((((((.((..-(((.((.((((.-....)))).)).))).)).)))))))))). ( -31.30) >DroEre_CAF1 61663 104 + 1 AACAGUUGG----AAUGGUCAAAGCAUUUACUUAACAUAUCUA-UCA--AGUGAGAAUACAGUCAUUUA-UGAAAGAGGGUU-UGAAGCCCCCUGUCUACGUCACUGUAUCUU ....(.(((----((((....(((......)))..))).))))-.).--...((((.((((((.((.((-.((.((.((((.-....)))).)).)))).)).)))))))))) ( -19.70) >DroYak_CAF1 61344 110 + 1 AACAGUUGGCAACAGUUGUCAA-UCA-CUACAUAACAAACUUGAUGGAUGGUAAGAAUACAGUAAUUUA-UGAAAGAGGGUUUUCAAACCCACUGACUACGUCACUGUAGCUU .(((((((....))((.((((.-...-............(((.((((((.(((....)))....)))))-)..))).(((((....)))))..)))).))...)))))..... ( -21.80) >consensus AACAGUUGG____AAUGUU_____CA_UUAC_____AUAUCUA_UCA__AGUGAGAAUACAGUGAUGCA_AGAAAGUGGGUU_UGAAGCCCCCUGCCUACGUCACUGUAUCUU ....................................................((((.(((((((......(((.((.(((((....))))).)).)))....))))))))))) (-15.94 = -16.74 + 0.80)
Location | 15,240,374 – 15,240,468 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 76.47 |
Mean single sequence MFE | -26.00 |
Consensus MFE | -14.34 |
Energy contribution | -15.14 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.18 |
Mean z-score | -2.10 |
Structure conservation index | 0.55 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15240374 94 - 22224390 AAGAUACAGUGACGUAGGCAUGGGGCUUCA-AACCCACUUUCUUUGCAACACUGUAUUCUCACU--UGA-UAGAUAU-----GUAA-UG-----AACAUU----CCAACUGUU ..(((((((((..(((((..((((......-..)))).....)))))..)))))))))......--.((-(((..((-----((..-..-----.)))).----....))))) ( -20.80) >DroSec_CAF1 60714 93 - 1 AAGAUACAGUGACGUAGGCAGGGGGCUUCA-AACCCACUUCCU-UGCAGCACUGUAUUCUCACU--UGA-UGGAUAU-----GUAA-UG-----AACAUU----CCAACUGUG ..(((((((((..(((((.((((((.....-..))).))).))-)))..)))))))))..(((.--.(.-((((.((-----((..-..-----.)))))----))).).))) ( -30.20) >DroSim_CAF1 69532 93 - 1 AAGAUACAGUGACGUAGGCAGGGGGCUUCA-AGCCCACUUCCU-UUCAACACUGUAUUCCCACU--UGA-UGGAUAU-----GUAA-UG-----AACAUU----CCAACUGUG ..(((((((((..(.(((.(((((((....-.)))).))))))-..)..)))))))))..(((.--.(.-((((.((-----((..-..-----.)))))----))).).))) ( -31.50) >DroEre_CAF1 61663 104 - 1 AAGAUACAGUGACGUAGACAGGGGGCUUCA-AACCCUCUUUCA-UAAAUGACUGUAUUCUCACU--UGA-UAGAUAUGUUAAGUAAAUGCUUUGACCAUU----CCAACUGUU ..((((((((.(..((((.((((((.....-..)))))).)).-))..).))))))))...(((--(((-((....))))))))................----......... ( -25.00) >DroYak_CAF1 61344 110 - 1 AAGCUACAGUGACGUAGUCAGUGGGUUUGAAAACCCUCUUUCA-UAAAUUACUGUAUUCUUACCAUCCAUCAAGUUUGUUAUGUAG-UGA-UUGACAACUGUUGCCAACUGUU ..((.(((((....(((((((.(((((....))))).)...((-(((...(((...................)))...)))))...-)))-)))...))))).))........ ( -22.51) >consensus AAGAUACAGUGACGUAGGCAGGGGGCUUCA_AACCCACUUUCU_UACAACACUGUAUUCUCACU__UGA_UAGAUAU_____GUAA_UG_____AACAUU____CCAACUGUU ..(((((((((....(((.((.(((........))).)).)))......)))))))))....................................................... (-14.34 = -15.14 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:28 2006