Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,215,515 – 15,215,617 |
Length | 102 |
Max. P | 0.707374 |
Location | 15,215,515 – 15,215,617 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 77.29 |
Mean single sequence MFE | -33.44 |
Consensus MFE | -21.96 |
Energy contribution | -22.02 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.25 |
Mean z-score | -1.35 |
Structure conservation index | 0.66 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.707374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15215515 102 - 22224390 -----------GGUUUUCA---U---UACAGACUGGCAGCAAUUCGUGAGCAACAAGCUCAAGGGCUGGGAGAUGAUGAACCUCAGCUGGGCGCGCAACUUCACGGGCAGCAUCAAGGU -----------((((((((---(---(.(.....).((((......(((((.....)))))...))))...))))).)))))...(((..((.((........)).)))))........ ( -26.20) >DroVir_CAF1 49965 107 - 1 ------AAU---UCUCUCU---CCCGCACAGAUUGGCAACAGUUUGUCAGCAAUAAGCUGAAGGGCUGGGAGCUCAUGAAUCUCAGCUGGGCGCGCAAUUUUACGGGCAGUAUUAAGGU ------...---.....((---((((...((((((((..(((((..(((((.....)))))..)))))...(((((((.....))..))))))).))))))..)))).))......... ( -33.90) >DroGri_CAF1 49477 111 - 1 UUAUUUGUU--GUGUUUCU---U---UGCAGAUUGGCAACAGUUUGUCAGCAAUAAGCUCAAGGGCUGGGAGACAAUGAAUCUCAGCUGGGCACGCAAUUUCACUGGCAGCAUCAAGGU .....((((--((......---(---(((((((((....))))))).)))......(((((...(((((((.........))))))))))))..............))))))....... ( -31.60) >DroWil_CAF1 52362 102 - 1 -----------GUUUAUUU---U---GACAGAUUGGCAACAGUUUGUUAGCAAUAAGCUUAAGGGCUGGGAGCUAAUGAAUCUUAGCUGGGCCCGCAAUUUUACUGGCAGUAUUAAGGU -----------((((((((---(---(((((((((....))))))))))).)))))))....(((((...((((((......)))))).)))))((.....(((.....))).....)) ( -33.60) >DroMoj_CAF1 57040 112 - 1 CUAUUCGUU---UCUCCCU---UUC-AACAGAUUGGCAACAGUUUGUGAGCAACAAGCUCAAAGGUUGGGAGCUCAUGAAUCUUAGCUGGGCGCGCAAUUUCACGGGCAGCAUCAAGGU ..((((((.---.(((((.---.((-.((((((((....))))))))((((.....))))...))..)))))...))))))....(((..((.((........)).)))))........ ( -36.50) >DroAna_CAF1 37993 110 - 1 ------AAUCUGAUCUUCCGGCC---CACAGAUUGGCAGCAAUUCGUGAGCAAUAAGCUCAAGGGCUGGGAGCUGAUGAACCUCAGCUGGGCCCGCAACUUCACCGGCAGCAUCAAGGU ------.((((...(((((((((---(((..((((....))))..))((((.....))))..)))))))))).(((((.......(((((.............)))))..))))))))) ( -38.82) >consensus ________U__GUUUUUCU___U___CACAGAUUGGCAACAGUUUGUGAGCAAUAAGCUCAAGGGCUGGGAGCUAAUGAAUCUCAGCUGGGCGCGCAAUUUCACGGGCAGCAUCAAGGU ...........................((((((((....))))))))..((.....((((...((((((((.........))))))))))))..((..........)).))........ (-21.96 = -22.02 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:11 2006