Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,181,403 – 15,181,523 |
Length | 120 |
Max. P | 0.515532 |
Location | 15,181,403 – 15,181,523 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.11 |
Mean single sequence MFE | -47.25 |
Consensus MFE | -28.75 |
Energy contribution | -28.67 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.21 |
Mean z-score | -1.83 |
Structure conservation index | 0.61 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15181403 120 + 22224390 CUACUCCAGACUUGGGCACAGUGCGGCGUCAGCAAGAAAGAGAUGGAAGUGCUGCGACGGCUGGGCUUCGAGAAGCCCACGCCCAUCCAGUGCCAGGCCAUACCGGCCAUCAUGUCCGGA ....(((.(((.(((((((.(((((((.((..(........)...))...))))).))((((((((((....))))))).)))......))))).((((.....))))..)).))).))) ( -50.50) >DroVir_CAF1 4518 119 + 1 UCUU-GCAGACGUGGGCACAGUGCGGCGUUAGCAAGAAAGAGAUGGACGUGCUGCGCAAGUUGGGCUUCGAGAAGCCAACGCCCAUACAGUGCCAGGCGAUACCGGCGAUAAUGUCUGGG ....-.(((((((((((...((((((((((..(........)...)))..)))))))..(((((.(((....))))))))))))))....((((.((.....)))))).....))))).. ( -45.30) >DroGri_CAF1 4969 120 + 1 CUUUGUUAGACGUGGGCGCAAUGUGGCGUUAGCAAGAAGGAAAUGGAUGUGUUGCGGAAACUGGGCUUUGAGAAGCCAACACCGAUUCAGUGCCAAGCGAUACCCGCCAUAAUGUCUGGC ....(((((((((.((((...(((.((....(((.....(((.(((.(((.....(....)..(((((....))))).)))))).)))..)))...)).)))..))))...))))))))) ( -39.40) >DroMoj_CAF1 3900 120 + 1 CCUUCACAGACGUGGGCGCAAUGUGGCGUCAGCAAAAAGGAGAUGGACGUGCUGCGCAAGUUGGGCUUCGAGAAACCUACGCCCAUACAGUGCCAGGCGAUACCGGCGAUAAUGUCUGGG ......(((((((.(((((......(((.(((((....(........).))))))))..(((((((....((....))..))))).)).))))).(.((....)).)....))))))).. ( -41.70) >DroAna_CAF1 4286 120 + 1 GUCUUCCAGACGUGGGCGCAGUGCGGCGUCAGCAAAAAGGAAAUGGACGUGCUCCGCCGGCUGGGCUUCGAGAAGCCGACGCCGAUCCAGUGCCAGGCCAUUCCGGCCAUCAUGUCCGGA ....(((.(((((((((((....((((((((((.....(((.((....))..)))....))).(((((....)))))))))))).....))))).((((.....))))..)))))).))) ( -56.00) >DroPer_CAF1 4269 117 + 1 C---CAUAGACAUGGGCACAGUGCGGCGUCAGCAAGAAAGAGAUGGAUGUGCUGCGGAAGCUGGGCUUUGAAAAGCCCACGCCAAUCCAGUGCCAGGCCAUACCGGCCAUCAUGUCCGGA (---(...(((((((((((...((((((.((.((.........))..))))))))(((.(((((((((....))))))).))...))).))))).((((.....))))..)))))).)). ( -50.60) >consensus CUUUCACAGACGUGGGCACAGUGCGGCGUCAGCAAGAAAGAGAUGGACGUGCUGCGCAAGCUGGGCUUCGAGAAGCCAACGCCCAUCCAGUGCCAGGCCAUACCGGCCAUAAUGUCCGGA ........(((((.(((((.....((((((((((....(....).....))))).........(((((....))))).)))))......)))))..(((.....)))....))))).... (-28.75 = -28.67 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:03 2006