Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,157,623 – 15,157,716 |
Length | 93 |
Max. P | 0.643211 |
Location | 15,157,623 – 15,157,716 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.05 |
Mean single sequence MFE | -37.58 |
Consensus MFE | -17.71 |
Energy contribution | -19.19 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.14 |
Mean z-score | -1.81 |
Structure conservation index | 0.47 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643211 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15157623 93 + 22224390 CUGCCUGGUGCUCGGACAGCGUAUGU------UGGCCGUAGCCACCGUUGC------GGGCAAACG----GAGAAGAGU--GCGACGGAAGAGC---GUCCAGGAAG-AG-----CAAAU ((.((((((((((...(..(((((.(------((.(((((((....)))))------)).)))...----.......))--)))..)...))))---).))))).))-..-----..... ( -35.80) >DroSec_CAF1 8618 93 + 1 CUGCCUGGUGCUCGGACAGCGGAUGG------UGGCCAUAGCCACCGUUGC------GGGCAAAAG----GAGAAGAGU--GCGACGGAAGAGC---GUCCAGGAAG-AG-----CAAGU ((.((((((((((...(.......((------((((....))))))(((((------(..(.....----.....)..)--))))))...))))---).))))).))-..-----..... ( -36.60) >DroSim_CAF1 8656 93 + 1 CUGCCUGGUGCUCGGACAGCGGAUGG------UGGCCAUAGCCACCGUUGC------GGGCAAAAG----GAGAAGAGU--GCGACGGAAGAGC---GUCCAGGAAG-AG-----CAAGU ((.((((((((((...(.......((------((((....))))))(((((------(..(.....----.....)..)--))))))...))))---).))))).))-..-----..... ( -36.60) >DroYak_CAF1 8130 93 + 1 UUGCCUGGUUUUUGGACAGCGGAUGG------UGGCCAUAGCCACCGUUGC------GGGCAAGAA----GAGAAGAGU--GCGACGGAAGAGC---GUCCAGGAAG-AG-----CAAGU ((((((...((((((((.(((.((((------((((....)))))))))))------.........----.........--((..(....).))---))))))))))-.)-----))).. ( -34.10) >DroAna_CAF1 67162 120 + 1 GUGUCUGGUCUUGAGGGAGCAAGUGGCUCCUCUGGCCACUGCCUCCGUCACCGUAGGGAGGAAGGGGUCGAAAAACAGUCGCCGAGGCAAGAGCAGUGUCCAGCAGGGAGCGAUACCAGU (((((((.(((....))).))....((((((((((.((((((((((.((.((....))..)).)))).............((....))....)))))).))))..))))))))))).... ( -44.80) >consensus CUGCCUGGUGCUCGGACAGCGGAUGG______UGGCCAUAGCCACCGUUGC______GGGCAAAAG____GAGAAGAGU__GCGACGGAAGAGC___GUCCAGGAAG_AG_____CAAGU ...(((((.((((....................(((....))).(((((((((..........................)))))))))..)))).....)))))................ (-17.71 = -19.19 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:53 2006