Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,655,016 – 1,655,120 |
Length | 104 |
Max. P | 0.659861 |
Location | 1,655,016 – 1,655,120 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.03 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -23.08 |
Energy contribution | -23.57 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.85 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.659861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1655016 104 - 22224390 GGGUCAGCA--------ACACAUGUUAACGGGCCGAAAAAUAAUUGACAAAUUCCACAUUUAUUCGCUUUGCUGAUUGAUGCCUAGCA--CGGCCCCGAGAAUUGCCCUUUU------CA ((((.((((--------.....))))...((((((...(((((.((..........)).))))).(((..((........))..))).--))))))........))))....------.. ( -25.40) >DroSec_CAF1 19849 110 - 1 GGGUCAGCAACACAGCAACACAUGUUAACGGGCCGAAAAAUAAUUGACAAAUUCCACAUUUAUUCGCUUUGCUGAUUGAUGCCUAGCA--CGGCCCCG--AAUUGCCCUUUU------CU ((((..((......)).............((((((...(((((.((..........)).))))).(((..((........))..))).--))))))..--....))))....------.. ( -26.40) >DroSim_CAF1 9103 110 - 1 GGGUCAGCAACACAUCAACACAUGUUAACGGGCCGAAAAAUAAUUGACAAAUUCCACAUUUAUUCGCUUUGCUGAUUGAUGCCUAGCA--CGGCCCCG--AAUUGCCCUUUU------CU (((.(((....((((......))))....((((((...(((((.((..........)).))))).(((..((........))..))).--))))))..--..))))))....------.. ( -25.30) >DroYak_CAF1 20465 107 - 1 GGG------------CAACACAUGUUAACGGGCCGAAAAAUAAUUGGCAAAUUGCACAUUUAUUCGCUUUGCUGAUUGAUGCCUAGCACACGGCCCCGA-AAUUGCCCUUUUGCUUUCCU (((------------((((....)))...((((((...(((((.((((.....)).)).))))).(((..((........))..)))...))))))...-....))))............ ( -32.10) >consensus GGGUCAGCA______CAACACAUGUUAACGGGCCGAAAAAUAAUUGACAAAUUCCACAUUUAUUCGCUUUGCUGAUUGAUGCCUAGCA__CGGCCCCG__AAUUGCCCUUUU______CU ((((............(((....)))...((((((...(((((.((..........)).))))).(((..((........))..)))...))))))........))))............ (-23.08 = -23.57 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:35 2006