Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,049,342 – 15,049,462 |
Length | 120 |
Max. P | 0.686601 |
Location | 15,049,342 – 15,049,462 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.33 |
Mean single sequence MFE | -24.50 |
Consensus MFE | -19.79 |
Energy contribution | -19.98 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.14 |
Mean z-score | -1.59 |
Structure conservation index | 0.81 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.686601 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15049342 120 - 22224390 GGCCUGUUAUUUCAGGCCGCUUUCAUGUCAUUUUUCAAGUUUACACAAAAUAUUUCAAGUGUUUGAUGUCUUUUGCACCCGAAGCGCAUCAAUUUCCUUCUUCACGCCACCCAACACUUG ((((((......)))))).....................................((((((((((((((.(((((....))))).)))))).....................)))))))) ( -25.69) >DroAna_CAF1 4799 111 - 1 GGGGUGUUAUUUCGGGCCGCUUUCAUGUCAUUUUUCAAGUUAACACAAAAUACUUCGAGUGUUUGAUGUCCUCCGCACCCGAAGCGCAUCAAUUUCCUCCUGC----CGCUCCAC----- ((((((...(((((((..((....((((((...(((((((...........)))).)))....)))))).....)).))))))).(((............)))----))))))..----- ( -25.30) >DroEre_CAF1 5091 120 - 1 GGCCUGUUAUUUCAGGCCGCUUUCAUGUCAUUUUUCAAGUUUACACAAAAUAUUUCAAGUGUUUGAUGUCUUUUGCACCCGAAGCGCAUCAAUUUCCUCCUUCACGCCAUUCCACACACG ((((((......))))))((......................((((............))))(((((((.(((((....))))).))))))).............))............. ( -23.50) >DroYak_CAF1 5751 120 - 1 GGCCUGUUAUUUCAGGCCGCUUUCAUGUCAUUUUUCAAGUUUACACAAAAUAUUUCAAGUGUUUGAUGUCUUUUGCACCCGAAGCGCAUCAAUUUUCUCCUUCACGCCAACCCACACAUU ((((((......))))))((......................((((............))))(((((((.(((((....))))).))))))).............))............. ( -23.50) >consensus GGCCUGUUAUUUCAGGCCGCUUUCAUGUCAUUUUUCAAGUUUACACAAAAUAUUUCAAGUGUUUGAUGUCUUUUGCACCCGAAGCGCAUCAAUUUCCUCCUUCACGCCACCCCACACAUG ((((((......))))))........................((((............))))(((((((.(((((....))))).)))))))............................ (-19.79 = -19.98 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:48 2006