Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,031,025 – 15,031,117 |
Length | 92 |
Max. P | 0.687748 |
Location | 15,031,025 – 15,031,117 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 76.62 |
Mean single sequence MFE | -29.92 |
Consensus MFE | -15.89 |
Energy contribution | -16.64 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.21 |
Mean z-score | -1.84 |
Structure conservation index | 0.53 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15031025 92 - 22224390 GUGGGCGCGGGUGAUGGGCUGGCUUGGAAUUUGCAUCAAUGCAAAUUCGAUUUGCAAUCGUUCAGGGCGAGC------CGGAAUCAGAAUUAGAAUC------------A ...........((((...(((((((((((((((((....)))))))))(((.....)))........)))))------))).))))...........------------. ( -27.20) >DroSec_CAF1 48509 89 - 1 ---GGCGUGGUUGAUGGGCUGGCUUGGAAUUUGCAUCAAUGCAAAUUCGAUUUGCAAUCGUUCAGGGCGAGC------CGGAAUCAGAAUUAGAAUC------------A ---.......(((((...(((((((((((((((((....)))))))))(((.....)))........)))))------))).)))))..........------------. ( -27.80) >DroEre_CAF1 49431 103 - 1 GUGGGCGUGGCUGAUGGGCUG-CCCGGAAUUUGCAUCAAUGCAAAUUCGAUUUGCAAUCGUUCAGGGCGAGC------CGGAAUCAGAAUUAGAAUCAGAAUCAGAAGCA ......((..(((((.(((((-(((.(((((((((....)))))))))(((.....))).....)))).)))------).((.((.......)).))...)))))..)). ( -35.30) >DroYak_CAF1 49149 110 - 1 GUGGGCGUGGCUGAUGGGCUGGCUAGGAAUUUGCAUCAAUGCAAAUUCGAUUAGCAGUCGUUCAGGGCGAGCCAGAGCCAGAAUCAGAAUUAGAAUUAGAAUCUGAAUCA ...(((.((((((.(((((..((((((((((((((....)))))))))..)))))....)))))...).)))))..))).((.(((((.((.......)).))))).)). ( -37.90) >DroAna_CAF1 43414 90 - 1 ----GCGGGCCAGACGG-----UCUGAAAUUUGCAUCAAUGCAAAUUCGAUUUGCAAUCGUUCAGGGCG-----------GAAUCGGAAACAGAAUCAGAUACAGACACA ----.((((((....))-----)))).((((((((....)))))))).(((((....((((.....)))-----------)....(....).)))))............. ( -21.40) >consensus GUGGGCGUGGCUGAUGGGCUGGCUUGGAAUUUGCAUCAAUGCAAAUUCGAUUUGCAAUCGUUCAGGGCGAGC______CGGAAUCAGAAUUAGAAUCAGA__C_GA__CA ..........(((((..(((.((((.(((((((((....)))))))))(((.....))).....)))).)))..........)))))....................... (-15.89 = -16.64 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:36 2006