Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,020,852 – 15,020,959 |
Length | 107 |
Max. P | 0.976009 |
Location | 15,020,852 – 15,020,959 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 76.62 |
Mean single sequence MFE | -30.98 |
Consensus MFE | -15.54 |
Energy contribution | -16.34 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.20 |
Mean z-score | -2.36 |
Structure conservation index | 0.50 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15020852 107 - 22224390 GACUCUUCUUGUUUUACAUCUACCGCCUCUUCCGGAGUGGUUUUCACCUCAUAAUCAGGUGGAGUAGCUACCUCUUUCUGGAGAGGUUUGGC---UACCUCCUUUUCCGA ................................(((((.((..(((((((.......)))))))(((((((((((((....)))))))..)))---)))..))..))))). ( -31.40) >DroSec_CAF1 38493 98 - 1 GGCUCUUCUUGUUUUACAUC---------UAUCGGAGUGGCCUUCACCUCAUAUUCAGGUGGAGUAUCUACCUCUUUCUGGGGAGGAUUGGC---UACCUCCUUUUCCGA ....................---------....(((((((((.((.(((((.....((((((.....)))))).....)))))..))..)))---)).))))........ ( -29.10) >DroSim_CAF1 42018 107 - 1 GGCUCUUCUUGUUUUACAUCUACCGCCUCUAUCGGAGUGGCCUUCACCUCAUAUUCAGGUGGAGUAUCUACCUCUUUCUGGGGAGGAUUGGC---UACCUCCUUUUCCGA (((......((.....))......)))......(((((((((.((.(((((.....((((((.....)))))).....)))))..))..)))---)).))))........ ( -32.70) >DroEre_CAF1 39425 107 - 1 GACUCUUCUGGUUUUUCAUCUACCGCGUCUUUGGGAGAGGUCUUGCCCUCAUGUUCAGGUAGGGUAUCUACCUCUUUCUGGGCAGGAUUGGC---CAACUCCUUUUCUGA (((.....((((.........)))).))).(..(((((((..(((((.((.((((((((.(((((....))).)).)))))))).))..)).---)))..)))))))..) ( -31.70) >DroYak_CAF1 39654 89 - 1 GGCUCUUCCUGUUUUUCAGCUACCACCUCUUGGGGA---------------------GGUAGAGUGUCUACCUCUUUCUGGGGAGGAUUGGCUUCCACCUCCUUUUGUGA ((((..((((((......)).....((((..(((((---------------------(((((.....))))))))))..))))))))..))))..(((........))). ( -30.00) >consensus GGCUCUUCUUGUUUUACAUCUACCGCCUCUUUCGGAGUGGCCUUCACCUCAUAUUCAGGUGGAGUAUCUACCUCUUUCUGGGGAGGAUUGGC___UACCUCCUUUUCCGA ((((.((((........................)))).))))...............(((((.....)))))....((.((((((((..((......)))))))))).)) (-15.54 = -16.34 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:56:24 2006