Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,961,478 – 14,961,582 |
Length | 104 |
Max. P | 0.942505 |
Location | 14,961,478 – 14,961,582 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 82.22 |
Mean single sequence MFE | -31.97 |
Consensus MFE | -23.27 |
Energy contribution | -23.27 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -2.22 |
Structure conservation index | 0.73 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14961478 104 + 22224390 GCCAAUAACACUUCCUCGC---G-------AC---CACUCAAAAGUGCCAAUGCGUAACGAAUAUCGUUUCGCAGCAGCGCCAAUUCUGAGUGUUAUGUCCGAUGAAGAUGUUCCUC-- ......((((((((.(((.---(-------((---((((((.((((((...((((.((((.....)))).))))...))))...)).))))))....)))))).)))).))))....-- ( -33.90) >DroSec_CAF1 5525 106 + 1 GCCAAUAACACUUCCUCGC---A-------AG---CACUCGAAAGUGCCAAUGCGUAACGAAUAUCGUUUCGCAGCAGCGCCAAUUCUGAGUGUUAUGUCCGAUGAAGAUGUUUCUCCC ......((((((((.((((---(-------((---((((((((.((((...((((.((((.....)))).))))...))))...))).))))))).))..))).)))).))))...... ( -33.80) >DroEre_CAF1 1850 114 + 1 GCCAAUAGCACUUCCUCGACUCGAAGUGCCUGCUCCACUCGAUAGUUCCAAUGCGUAACGAAUGCCGCUUCGUA---GCGCCAAUUCUGAGUGUUAUGUCCGAUGCAGAUGCUCCUU-- ((.....(((((((........)))))))(((((((((((((....))....((((.(((((......))))).---)))).......)))))........)).))))..)).....-- ( -30.30) >DroYak_CAF1 7484 111 + 1 GCCAAUAACACUUCCUCGACUCGAAGUGCCUA---CACUCGAAAGUGCCAAUGCGUAACGAAUAUCGUUUCGCA---GCGCCAAUUCUGAGUGUUAUAUCCGAUGAAGAUGUUCCUC-- ......((((((((.(((((.....))....(---((((((((.((((...((((.((((.....)))).))))---))))...))).))))))......))).)))).))))....-- ( -29.90) >consensus GCCAAUAACACUUCCUCGA___G_______AG___CACUCGAAAGUGCCAAUGCGUAACGAAUAUCGUUUCGCA___GCGCCAAUUCUGAGUGUUAUGUCCGAUGAAGAUGUUCCUC__ ......((((((((.(((.................((((((...((((...((((.((((.....)))).))))...))))......)))))).......))).)))).))))...... (-23.27 = -23.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:56 2006