Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,894,524 – 14,894,622 |
Length | 98 |
Max. P | 0.985384 |
Location | 14,894,524 – 14,894,622 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 73.96 |
Mean single sequence MFE | -40.89 |
Consensus MFE | -18.45 |
Energy contribution | -21.18 |
Covariance contribution | 2.73 |
Combinations/Pair | 1.31 |
Mean z-score | -2.54 |
Structure conservation index | 0.45 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985384 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14894524 98 + 22224390 GCAUUCCCAGGUCCAACGGCGCCGUGCAUAGCCAUAUGCGCGUGGCAAGAGCAAUCGAGUAGAUUGCUUAUCAUACAGCUGUGGGCACACAUCAUGCA ((((......(((((.((((((((((((((....)))))))..)))..((((((((.....))))))))........))))))))).......)))). ( -41.02) >DroVir_CAF1 75096 95 + 1 GCUGCACCGG---CACCGCCGCCGCCCGCAGCGUGCUGCGCAUGACAGGAGCAUUCGACCAGAUUGCUGACCAUGCAGCUGCUGGCGCAGACCAGACA .((((.((((---((.(((.(((((.....))).)).))(((((.....((((.((.....)).))))...))))).).)))))).))))........ ( -39.00) >DroGri_CAF1 49022 95 + 1 GCGCCACCAC---CGCCGCCGCCACCCAUUGCGAGCGGCGCAUGGCAGGCACAAUCGACCAGGUUGCUGACCAUGCAACUGCCGGCGCAAACGAGGCA (((((.....---.((((((((........))).)))))(((((((((...(((((.....)))))))).)))))).......))))).......... ( -43.70) >DroSec_CAF1 40520 98 + 1 GCAUUCCCAGGCCCAACAGCGCCGUGCAUAGCCAUGUGCGCGUGGCAAGAGCAAUCGAGUAGGUUGCUUAUCAUGCAACUGUGGGCACACAUCAUGCA ((((......(((((.(((.....(((((.((((((....))))))..((((((((.....))))))))...))))).)))))))).......)))). ( -41.02) >DroEre_CAF1 39395 98 + 1 GCGUUCCCGGGUCCAAGGGCUCCAUGCAUGGCCAUGUGGGCGUGGCAGGAGCAAUCGUACAUGUUGCCUAUCAUGCAGCUGUGGGCACACAUCAUGCA ((((.....((((((..((((.((((...(((.(((((..((..((....))...))..))))).)))...)))).)))).))))).).....)))). ( -36.20) >DroYak_CAF1 39675 98 + 1 GCAUUGCCAGGCCCAACGGCUCCGUGCAUGGCCAAGUGGGCGUGGCAGGAGCAAUCGAGAAGGUUGCUUAUCAUGCAGCUGUGGGCACACAUCAUGCA ...((((((.(((((..((((........))))...))))).))))))((((((((.....))))))))....((((..((((....))))...)))) ( -44.40) >consensus GCAUUCCCAGG_CCAACGGCGCCGUGCAUAGCCAUGUGCGCGUGGCAGGAGCAAUCGAGCAGGUUGCUUAUCAUGCAGCUGUGGGCACACAUCAUGCA ((((......(((((.((((((...............))((((((...((((((((.....)))))))).)))))).))))))))).......)))). (-18.45 = -21.18 + 2.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:23 2006