Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,859,738 – 14,859,856 |
Length | 118 |
Max. P | 0.783006 |
Location | 14,859,738 – 14,859,829 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 95.67 |
Mean single sequence MFE | -30.90 |
Consensus MFE | -27.79 |
Energy contribution | -27.57 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.06 |
Structure conservation index | 0.90 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14859738 91 - 22224390 UUCCACAUUGUAGAAGAGGGGGCGGCAAGCGGAAGAGGGCGGGGCAACGGCGCCGUCUUCUUUCAUUUCAGUUUACUCUUUCAUUCAUUUU-- ............((((((..(((.(.(((.((((((((((((.((....)).)))))))))))).)))).)))..))))))..........-- ( -32.70) >DroSec_CAF1 13277 91 - 1 UUCCACAUUGUAGAA--GGGGGCGGCAAGCGGAAGAGGGCGGGGCAACGGCGCCGUCUUCUUUCAUUUCAGUUUAUUCUUUCAUUCAUUUUAU ............(((--((((((.....))((((((((((((.((....)).))))))))))))...........)))))))........... ( -31.10) >DroSim_CAF1 5932 91 - 1 UUCCACAUUGUAGAU--GGGGGCGGCAAGCGGAAGAGGGCGGGGCAACGGCGCCGUCUUCUUUCAUUUCAGUUUAUUCUUUCAUUCAUUUUAU ............(((--(..(((.....))((((((((((((.((....)).))))))))))))..............)..))))........ ( -28.90) >consensus UUCCACAUUGUAGAA__GGGGGCGGCAAGCGGAAGAGGGCGGGGCAACGGCGCCGUCUUCUUUCAUUUCAGUUUAUUCUUUCAUUCAUUUUAU .........(((((...(..(((.....))((((((((((((.((....)).)))))))))))).)..)..)))))................. (-27.79 = -27.57 + -0.22)
Location | 14,859,764 – 14,859,856 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 95.62 |
Mean single sequence MFE | -37.30 |
Consensus MFE | -35.27 |
Energy contribution | -35.27 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.95 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14859764 92 - 22224390 GGCAUGGAAGGCGGUUGGGGUGGGGCGUUCCACAUUGUAGAAGAGGGGGCGGCAAGCGGAAGAGGGCGGGGCAACGGCGCCGUCUUCUUUCA .((.......)).......((..(.((((((...((......)).)))))).)..))((((((((((((.((....)).)))))))))))). ( -36.10) >DroSec_CAF1 13305 90 - 1 GGCGAGCAAGGCGGUUGGGGUGGGGCGUUCCACAUUGUAGAA--GGGGGCGGCAAGCGGAAGAGGGCGGGGCAACGGCGCCGUCUUCUUUCA ..(.(((......))).).((..(.((((((...((....))--.)))))).)..))((((((((((((.((....)).)))))))))))). ( -36.40) >DroSim_CAF1 5960 90 - 1 GGCGAGCAAGGCGGUUGGGGUGGGGCGUUCCACAUUGUAGAU--GGGGGCGGCAAGCGGAAGAGGGCGGGGCAACGGCGCCGUCUUCUUUCA ..(.(((......))).).((..(.((((((.((((...)))--))))))).)..))((((((((((((.((....)).)))))))))))). ( -39.40) >consensus GGCGAGCAAGGCGGUUGGGGUGGGGCGUUCCACAUUGUAGAA__GGGGGCGGCAAGCGGAAGAGGGCGGGGCAACGGCGCCGUCUUCUUUCA .((.......)).......((..(.((((((..............)))))).)..))((((((((((((.((....)).)))))))))))). (-35.27 = -35.27 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:15 2006