Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,854,476 – 14,854,569 |
Length | 93 |
Max. P | 0.735825 |
Location | 14,854,476 – 14,854,569 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -10.57 |
Consensus MFE | -10.15 |
Energy contribution | -9.27 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.21 |
Mean z-score | 0.40 |
Structure conservation index | 0.96 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14854476 93 - 22224390 UCACGAGUAAAGUCACGUGUUGACCGCGUUUGAACAUUUGUUAAGCUCUAUUUAAAAUUAUAAUCAUUCUAUGCUCUUUAC-AUUCUACAAAUA ....(((((..((((.....))))...((((((.(....))))))).........................))))).....-............ ( -10.20) >DroSec_CAF1 8521 93 - 1 UCACGAGUAAAGUCACCUGUUGACCGCGUUCGAACAUUUGUUAAGCUCUAUUUAAAAUUAUAAUCAUUCUAUGCUCUUUAC-AUUCUACAAACA ....(((((..((((.....)))).((.....(((....)))..)).........................))))).....-............ ( -9.80) >DroYak_CAF1 8551 84 - 1 UCACGAGCUAAGUCACCUGUUGACCGCAUUCGAACAUUUGUUAAGCUCCAUUUGGAUUUCAUAUCAUUCUAGGUUCUGUACA----------CA ....(((((.((.((..((((((......)).))))..)))).))))).(((((((...........)))))))........----------.. ( -11.70) >consensus UCACGAGUAAAGUCACCUGUUGACCGCGUUCGAACAUUUGUUAAGCUCUAUUUAAAAUUAUAAUCAUUCUAUGCUCUUUAC_AUUCUACAAACA ....(((((..((((.....)))).((.....(((....)))..)).........................))))).................. (-10.15 = -9.27 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:14 2006