Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,818,478 – 14,818,578 |
Length | 100 |
Max. P | 0.965141 |
Location | 14,818,478 – 14,818,578 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 96.10 |
Mean single sequence MFE | -26.11 |
Consensus MFE | -26.11 |
Energy contribution | -26.11 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.23 |
Structure conservation index | 1.00 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14818478 100 - 22224390 CCAAGCCAAUGAAUAUGUAUAAAAAUAUUCGCAUGCAACGGCUCGAUGGCUCUGCUGCCGUUGGAAAAUGGGAAAUGCAUAUUUAUGUGAUACACACAC--A-- ........((((((((((((.......(((.(((((....))((((((((......))))))))...))).)))))))))))))))(((.....)))..--.-- ( -26.11) >DroSim_CAF1 11648 102 - 1 CCAAGCCAAUGAAUAUGUAUAAAAAUAUUCGCAUGCAAUGGCUCGAUGGCUCUGCUGCCGUUGGAAAAUGGGAAAUGCAUAUUUAUGUGAUACACACAC--ACA ........((((((((((((.......(((.(((((....))((((((((......))))))))...))).)))))))))))))))(((.....)))..--... ( -26.11) >DroEre_CAF1 17342 102 - 1 CCAAGCCAAUGAAUAUGUAUAAAAAUAUUCGCAUGCAAUGGCUCGAUGGCUCUACUGCCGUUGGAAAAUGGGAAAUGCAUAUUUAUGUGAUACACACACACA-- ........((((((((((((.......(((.(((((....))((((((((......))))))))...))).)))))))))))))))(((.....))).....-- ( -26.11) >consensus CCAAGCCAAUGAAUAUGUAUAAAAAUAUUCGCAUGCAAUGGCUCGAUGGCUCUGCUGCCGUUGGAAAAUGGGAAAUGCAUAUUUAUGUGAUACACACAC__A__ ........((((((((((((.......(((.(((((....))((((((((......))))))))...))).)))))))))))))))(((.....)))....... (-26.11 = -26.11 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:55:00 2006