Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,815,272 – 14,815,369 |
Length | 97 |
Max. P | 0.915894 |
Location | 14,815,272 – 14,815,369 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 93.81 |
Mean single sequence MFE | -24.96 |
Consensus MFE | -21.85 |
Energy contribution | -22.63 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -2.70 |
Structure conservation index | 0.88 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915894 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14815272 97 + 22224390 CCGUAUAACGUUCAACAUUCACACUAAUGUCAUAAAAACCAACCAAACAAAUGAUUCUGUUAGUGUGAGUUUAAGUGUGAACCUAUGUGCGGGUAUG (((((((..((((((((((((((((((((((((.................)))))...))))))))))))....)).)))))...)))))))..... ( -27.63) >DroSim_CAF1 8461 97 + 1 CCGUAUAACGUUCAACAUUCACACUAAUGUCAUAAAAACCAACCAAACAAAUGAUUCUGUUAGUGUGAGUUUAACUGUGAAUCUAUGUGCGGGUAUG (((((((..(((((..(((((((((((((((((.................)))))...)))))))))))).......)))))...)))))))..... ( -25.73) >DroEre_CAF1 14357 97 + 1 CCCUAUAGCGUUCAGCAUUCACACUAAUGCCAUAAAAACCAACCAAACAAAUUAUUCUGUUAGUGUGAGUUUAAGUGUGAAUCCAUGUGUGGGUAUG .((((((((.....))(((((((((...((((((..(((...................)))..)))).))...))))))))).....)))))).... ( -21.51) >consensus CCGUAUAACGUUCAACAUUCACACUAAUGUCAUAAAAACCAACCAAACAAAUGAUUCUGUUAGUGUGAGUUUAAGUGUGAAUCUAUGUGCGGGUAUG (((((((..(((((..(((((((((((((((((.................)))))...)))))))))))).......)))))...)))))))..... (-21.85 = -22.63 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:57 2006