Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,750,824 – 14,750,944 |
Length | 120 |
Max. P | 0.538446 |
Location | 14,750,824 – 14,750,944 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.72 |
Mean single sequence MFE | -44.37 |
Consensus MFE | -29.47 |
Energy contribution | -29.58 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.26 |
Mean z-score | -1.35 |
Structure conservation index | 0.66 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538446 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14750824 120 - 22224390 GUGGGCACUUGUCGCAUGGCUCCAAGAAAGGGAGUGGAUUCCCAGGAGAAUGGAGGCGUGGUGGACGAAAGAUUGAGGGUUCAUGGGGUCAAGGGUCUUCGUGUGGUGGAUGCCAGCAUU ((.((((.(..((((((((((((.......)))))(((((((((......))).(((.(.((((((............)))))).).)))..)))))).)))))))..).)))).))... ( -43.50) >DroSec_CAF1 29886 120 - 1 GUGGGCACUUGCCGCAUGGCUCCAAGGAAGGAGGUGGACUCCCAGGAGGACGGAGGCGUGGUGGACGAGAGAUUAAGGGUUCAUGGGGUCAAGGGUCUUCGUGUGGUGGAUGCCAGCAUU ((.((((.(..((((((((((((......))))..((((((((....)).....(((.(.((((((............)))))).).)))..))))))))))))))..).)))).))... ( -46.50) >DroSim_CAF1 4009 120 - 1 GUGGGCACUUGUCGCAUGGCUCCAAGGAAGGAGGUGGAUUCCGAGGAGGACGGAGGCGUGGUGGACGAAAGAUUAAGGGUUCAUGGGGUCAAGGGUCUUCGUGUGGUGGAUGCCAGCAUU ((.((((.(..((((((((((((..((((.........))))..))))(((...(((.(.((((((............)))))).).)))....))).))))))))..).)))).))... ( -42.30) >DroEre_CAF1 3073 120 - 1 GUGGGCACUUGUCGCAUGGCUCCGAGGAAGGAGGCGCAUGCCCAGCAGGAUGGCGGCGUGGUGGACGAAAGAUUGAGGGUGCAUGGCGUCAAGGGUCUUCGGGUGGUGGAUGCCAGCAUU ((.((((....((.(((.((.(((((((..((.((.(((((((..(((..(..((..........))..)..)))..)).))))))).)).....))))))))).))))))))).))... ( -45.60) >DroYak_CAF1 3588 120 - 1 GUGGGCACUUGUCGCAUGGCUCCGAGGAAGGAGGGAAAUUCUGGGGAGGAUGGAGGCGUGGUGGACGAAAGAUUGCGAGUUCACGGAGUCAAGGGUCUUCGUGUGGUGGAUGCCAGCAUU ((.((((.(..((((((..((((..((((.........))))..))))...((((((...(..(.(....).)..)((.((....)).))....))))))))))))..).)))).))... ( -40.20) >DroPer_CAF1 4054 105 - 1 GUCGGCUCCUGUCGCAUGGCUGCG------GCCGGGGAUCC---------GCGGGGCGUCGUCGAUGAGCGGCUGAGGGUGCACGGGGUGCGAGGCCUGCGCGUGGUGGACGCCAGCAUC ...((((((.((((((....))))------)).))))..))---------((..((((((..(.(((.((((((.....(((((...))))).)))).)).))).)..)))))).))... ( -48.10) >consensus GUGGGCACUUGUCGCAUGGCUCCAAGGAAGGAGGUGGAUUCCCAGGAGGAUGGAGGCGUGGUGGACGAAAGAUUGAGGGUUCAUGGGGUCAAGGGUCUUCGUGUGGUGGAUGCCAGCAUU ((.((((.(..(((((((((((.................(((.........)))(((.(.((((((............)))))).).)))..)))))...))))))..).)))).))... (-29.47 = -29.58 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:19 2006