Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,732,646 – 14,732,745 |
Length | 99 |
Max. P | 0.521307 |
Location | 14,732,646 – 14,732,745 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 88.40 |
Mean single sequence MFE | -18.08 |
Consensus MFE | -14.15 |
Energy contribution | -14.09 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.14 |
Mean z-score | -1.39 |
Structure conservation index | 0.78 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14732646 99 + 22224390 GUUUUAAUUUCUUUGUUU-UUGAAUAGUUUAUCUUAUA-------UUUUUAGUACUAUCUAUGGUCAGUUAUCUUGGGUUGACACUAUUUUAGUGUUUACUGGAGCA ............(((...-.((.((((((((.......-------....))).))))).))....)))....(((.(((.(((((((...))))))).))).))).. ( -13.20) >DroSec_CAF1 25714 97 + 1 GUUUUAAUUUCUUUGUUU-UUGGAUAGUUUAUCUUAUA-------UU--UGGUACUAUCUAUGGUCAGUUAUCUUGGGUUGACACUAUUUUAGUGUUUACUGGAGCA ............(((...-.((((((((..(((.....-------..--.)))))))))))....)))....(((.(((.(((((((...))))))).))).))).. ( -21.00) >DroSim_CAF1 29736 97 + 1 GUUUUAAUUUCUUUGUUU-UUGGAUAGUUUAUCUUAUA-------UU--UGGUACUAUCUAUGGUCAGUUAUCUUGGGUUGACACUAUUUUAGUGUUUACUGGAGCA ............(((...-.((((((((..(((.....-------..--.)))))))))))....)))....(((.(((.(((((((...))))))).))).))).. ( -21.00) >DroEre_CAF1 22609 105 + 1 GGUAUUAUUUCUUAGCUUUUUGUGUAGUUUAUCUUAUUGGUAUCUCU--UGGUAUUAUCUAUGGUCAGUUAUCUUGGGUUGACACUCUUUUAGUGUUUACUAGAGCA ..............(((((....(((..(.(((....(((((((...--.))))))).....))).)..)))....(((.((((((.....)))))).)))))))). ( -17.10) >consensus GUUUUAAUUUCUUUGUUU_UUGGAUAGUUUAUCUUAUA_______UU__UGGUACUAUCUAUGGUCAGUUAUCUUGGGUUGACACUAUUUUAGUGUUUACUGGAGCA ....................((((((((....((................)).))))))))...........(((.(((.((((((.....)))))).))).))).. (-14.15 = -14.09 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:16 2006