Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,729,223 – 14,729,315 |
Length | 92 |
Max. P | 0.786841 |
Location | 14,729,223 – 14,729,315 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 97.62 |
Mean single sequence MFE | -20.92 |
Consensus MFE | -19.24 |
Energy contribution | -19.84 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.92 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14729223 92 + 22224390 ACCCGC-AACCCAUUCAAGUUGAGCUGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAACUCAUCGAUGCGGAUUAGCAUAUGGACAGAA .....(-(((........))))..((((((((...(.(((.((((.((....((((.......))))..)).)))).))))..)))))))).. ( -21.50) >DroSec_CAF1 22310 92 + 1 ACCCGC-AACCCAUUCAAGUUGAGCUGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAGCUCAUCGAUGCGGAUUAGCAUAUGGACAGAA ......-...((((....(.((((((((.(((((((......)))))))(....)...)))))))).).((((......))))))))...... ( -23.10) >DroSim_CAF1 25951 92 + 1 ACCCGC-AACCCAUUCAAGUUGAGCCGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAGCUCAUCGAUGCAGAUUAGCAUAUGGACAGAA ......-...((((....(.(((((.((((((((((......))))))).....)))....))))).).((((......))))))))...... ( -19.50) >DroEre_CAF1 19077 92 + 1 ACCCGC-AACCCAUUCAAGUUGAGCUGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAGCUCAUCGAUGCAGAUUAGCAUAUGGACAGAA ......-...((((....(.((((((((.(((((((......)))))))(....)...)))))))).).((((......))))))))...... ( -22.40) >DroYak_CAF1 21950 93 + 1 ACCCGCCAACCCAUUCAAGUUGAGCUGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAGCACAUCGAUGCAGAUUAGCAUAUGGACAGAA ....((((((........)))).))(((((((((((......)))))))...............(((..((((......)))))))))))... ( -18.10) >consensus ACCCGC_AACCCAUUCAAGUUGAGCUGUCUAUUUGGUCUAUUCCGAAUACUAAUGACUACAGCUCAUCGAUGCAGAUUAGCAUAUGGACAGAA ..........((((....(.((((((((.(((((((......)))))))(....)...)))))))).).((((......))))))))...... (-19.24 = -19.84 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:12 2006