Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,704,702 – 14,704,818 |
Length | 116 |
Max. P | 0.790706 |
Location | 14,704,702 – 14,704,818 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 88.50 |
Mean single sequence MFE | -23.08 |
Consensus MFE | -15.39 |
Energy contribution | -16.14 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.04 |
Mean z-score | -2.72 |
Structure conservation index | 0.67 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14704702 116 - 22224390 AUUAAUGGGUGCAAAGCGCUUCGAAAUGAAAUGCACUCAAGUGCAUAGUUUUUAUUUUUGUUUGCUUUUUUUUUU-CAUUUGCACAAUCCACCCACAGAAAACCCACAUUAAACUAU .((((((.((((((((((..(.((((((((((((((....))))))....)))))))).)..)))).........-...))))))..((........)).......))))))..... ( -22.40) >DroSec_CAF1 23647 113 - 1 AUUAAUGGGUGCAAAGCGCUUCGAAAUGAAAAGCACUCAAGUGCAUAGUUUUGUUUUUUGUUUGCUUUU--UUUU-CAUUUGCACAAUCCACCCACA-AAAACCCACAUUAAACCAU .....((((((....(.((...((((.((((((((..((((.(((......)))..))))..)))))))--))))-)....)).)....))))))..-................... ( -25.80) >DroEre_CAF1 24027 109 - 1 AUCAAUGGGUGCAAAACAGCUCGAAAGGAAAUGCACUCAAGUGCAUAGUUUUU------UUUUGCUUUU--UUUUGCAUUUACACAAUCCACCCACAAAAAACCCACAUUAAACUAU .....(((((((((((.(((..(((((((.((((((....))))))..)))))------))..)))...--)))))))))))................................... ( -23.60) >DroYak_CAF1 21814 107 - 1 AUUAAUGGGUGCAA-ACAGUUCGAAAUGAAAUGCACUCAAGUGCAUAGUUUUU------UUUUGCUUUU--UUUU-CAUUUGCACAAUCCACCCACAAAAAACCCACAUUAAACUAU .....((((((...-...((.(.(((((((((((((....))))))(((....------....)))...--..))-)))))).))....))))))...................... ( -20.50) >consensus AUUAAUGGGUGCAAAACACUUCGAAAUGAAAUGCACUCAAGUGCAUAGUUUUU______GUUUGCUUUU__UUUU_CAUUUGCACAAUCCACCCACAAAAAACCCACAUUAAACUAU .....((((((.(((((..(((.....)))((((((....)))))).)))))..........(((................))).....))))))...................... (-15.39 = -16.14 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:01 2006