Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,627,968 – 1,628,088 |
Length | 120 |
Max. P | 0.776112 |
Location | 1,627,968 – 1,628,088 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.33 |
Mean single sequence MFE | -36.95 |
Consensus MFE | -27.10 |
Energy contribution | -28.13 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.09 |
Mean z-score | -1.57 |
Structure conservation index | 0.73 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.776112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1627968 120 + 22224390 GGCGAGCUGCGACCAGGACAACAUUUUGCGCAGAAUGCCAAAAUGGAAACUAUUUUUGAAUAGCUCUUGCAUUGAAGGCUCCUUGGAAGGGCUGAGUCAAGCCGGCACCUUGUUCGCUUG (((((((.....(((((....(((((((.((.....)))))))))................(((.(((......)))))).)))))((((((((.(.....))))).))))))))))).. ( -37.50) >DroSec_CAF1 23221 120 + 1 GGCGAGCUGCGACCAGGACAACAUUUUGCGCAGAAUGCCAAAAUGGAAACUAUUUUUGAAUAGCCCUUACCAUGGGGGCUCCUUGGAAGGGCUGAGUCAAGUCCGCACCUUGUUCGCUUG (((((((........((((..(((((((.((.....)))))))))..........((((.((((((((.(((.(((....))))))))))))))..)))))))).......))))))).. ( -46.16) >DroYak_CAF1 27435 96 + 1 GGCGAGCUGCGACCAGGACAACAUUCUGCGCAGAAUGCCAAAAUAGAAACUAUUUUUGAAUAGAGCUC--CAU--------CCUGGAAAG--------------GCACCUUGUGCGCCCG ((((..(((((..(((((.....))))))))))..((((..........(((((....)))))...((--(..--------...)))..)--------------))).......)))).. ( -27.20) >consensus GGCGAGCUGCGACCAGGACAACAUUUUGCGCAGAAUGCCAAAAUGGAAACUAUUUUUGAAUAGCCCUU_CCAUG__GGCUCCUUGGAAGGGCUGAGUCAAG_C_GCACCUUGUUCGCUUG ((((((((((..(((((....(((((((.((.....)))))))))....(((((....)))))..................)))))...((((......)))).)))....))))))).. (-27.10 = -28.13 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:57 2006