Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,650,843 – 14,650,933 |
Length | 90 |
Max. P | 0.669111 |
Location | 14,650,843 – 14,650,933 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 89.94 |
Mean single sequence MFE | -16.70 |
Consensus MFE | -12.21 |
Energy contribution | -11.53 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.23 |
Mean z-score | -1.87 |
Structure conservation index | 0.73 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.669111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14650843 90 - 22224390 AUUGAAAAGCACAAAUCAAAGUGCUUCAAAAAUGUUGUAGGAAAAUUUUCCAAUUCGAUUUUCCAUUAUGGCAUUCCUCAUACAAAUCGU .((((..(((((........))))))))).(((((..((((((((((.........))))))))..))..)))))............... ( -19.40) >DroSec_CAF1 120170 90 - 1 AUUGGAAAACACAAAUCAAAGUGCUUCGAAAGUGUUGUUGGAAAAUUUUCCAAUUCGAUUUUCCAUUAUGGCAUUCCUCAUACAAAUCGU ..((((((((((........)))..((((.......(((((((....)))))))))))))))))).(((((......)))))........ ( -16.21) >DroEre_CAF1 113530 87 - 1 AUCGCAAAGCACCAAUCAAAGUGCUUCGAAAAUG---UAGGAAAAUUUUCCAAUUCGAUUUUCCAUUAUGGCAUUCCUCAUACAAAUCGU .(((..((((((........)))))))))...((---((((((((((.........)))))))).....((....))...))))...... ( -16.20) >DroYak_CAF1 116294 87 - 1 AUCGAAGACCACCAAUAAAAGUGCUUCGAAAAUG---UAGGAAAUUUUUCCAAUUCGAAUUUCUAUUAUGGCAUUCCUCAUACAAAUCGU .((((((..(((........)))))))))...((---((((((....)))).....((((.((......)).))))....))))...... ( -15.00) >consensus AUCGAAAAGCACAAAUCAAAGUGCUUCGAAAAUG___UAGGAAAAUUUUCCAAUUCGAUUUUCCAUUAUGGCAUUCCUCAUACAAAUCGU .(((..((((((........)))))))))..........((((((((.........))))))))..(((((......)))))........ (-12.21 = -11.53 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:32 2006