Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,643,363 – 14,643,521 |
Length | 158 |
Max. P | 0.919233 |
Location | 14,643,363 – 14,643,482 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 90.79 |
Mean single sequence MFE | -37.10 |
Consensus MFE | -31.98 |
Energy contribution | -33.18 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.10 |
Mean z-score | -1.63 |
Structure conservation index | 0.86 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14643363 119 - 22224390 GUGUGGUUUUGCAGUCACAAUAAAUGUCGUAAACAACAUUGGUCUAAAGAGGACAUUGGACUCAUACCCACAUCCUGGGACGACUUGGGCAGGUCCUUCAGCACAGGGUCCUUCAAGCG ((((((...((.((((.((((.(((((.(....).))))).((((.....))))))))))))))...)))))).......((.(((((..(((.((((......)))).)))))))))) ( -33.00) >DroSec_CAF1 112851 118 - 1 GUGUGGU-CUGCAGUCACAAUAAGUGUCGUAAACAACAUGGGUCUAAAGAGGACAUUGGACUCAUACCCACAUCCUGGGAGGACUUGGGCAGGUCCUCCAGCACAGGGUCCUUCAAGCG (((.(((-.((.((((.((((..((((.(....).))))..((((.....)))))))))))))).))))))(((((((((((((((....)))))))))....)))))).......... ( -41.60) >DroSim_CAF1 110832 118 - 1 GUGUGGU-CUGCAGUCACAAUAAGUGUCGUAAACAACAUUGGUCUAAAGAGGACAUUGGACUCAUACCCACAUCCUGGGAGGACUUGGGCAGGUCCUCCAGCACAGGGUCCUUCAAGCG (((.(((-.((.((((.((((.(((((.(....).))))).((((.....)))))))))))))).))))))(((((((((((((((....)))))))))....)))))).......... ( -42.20) >DroEre_CAF1 106640 116 - 1 GAGUGGU-CUGCAGUCACAAUAAAUGUCGUAAGCAACAUUGGUCUAAAAAGGACAUUGGACUCAUACCCACAUCCUGGAAGGACUUG-GCAGGUCCUUCAGAGCAG-GUCCUUCAAGCG (((.(..-((((((((.((((.(((((.(....).))))).((((.....))))))))))))............(((.(((((((..-...)))))))))).))))-..).)))..... ( -36.50) >DroYak_CAF1 109306 107 - 1 GAGUGGU-CUGCAGUCACAAUAAAUGUCGUAAACAACAUUGGUCCAAAGAGGACAUUGGACUCAUACCCACAUCCUGGG-----------AGGUCCUUCAGAACAGGGUCCUUCAAGCG ..((((.-.((.((((.((((.(((((.(....).))))).((((.....))))))))))))))...))))......((-----------(((.((((......)))).)))))..... ( -32.20) >consensus GUGUGGU_CUGCAGUCACAAUAAAUGUCGUAAACAACAUUGGUCUAAAGAGGACAUUGGACUCAUACCCACAUCCUGGGAGGACUUGGGCAGGUCCUUCAGCACAGGGUCCUUCAAGCG ..((((...((.((((.((((.(((((.(....).))))).((((.....))))))))))))))...))))(((((((((((((((....)))))))))....)))))).......... (-31.98 = -33.18 + 1.20)
Location | 14,643,402 – 14,643,521 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.84 |
Mean single sequence MFE | -27.92 |
Consensus MFE | -20.30 |
Energy contribution | -20.54 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.70 |
Structure conservation index | 0.73 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14643402 119 - 22224390 UUCCA-UACCCUCUAUGCUAUUAUCCAAGUCCUUUAAUUCGUGUGGUUUUGCAGUCACAAUAAAUGUCGUAAACAACAUUGGUCUAAAGAGGACAUUGGACUCAUACCCACAUCCUGGGA .....-.................((((((((((((......((((..(....)..))))...(((((.(....).))))).......))))))).)))))......((((.....)))). ( -25.50) >DroSec_CAF1 112890 112 - 1 UUCCAAUACCCU-------AUUAUCCAAGUCCUUUAAUUCGUGUGGU-CUGCAGUCACAAUAAGUGUCGUAAACAACAUGGGUCUAAAGAGGACAUUGGACUCAUACCCACAUCCUGGGA ............-------....((((((((((((.((((((((.((-.(((.(.(((.....))).)))).)).))))))))....))))))).)))))......((((.....)))). ( -32.30) >DroSim_CAF1 110871 119 - 1 UUCCAAUACCCUAUGUGUUAUUAUCCAAGUCCUUUAAUUCGUGUGGU-CUGCAGUCACAAUAAGUGUCGUAAACAACAUUGGUCUAAAGAGGACAUUGGACUCAUACCCACAUCCUGGGA ........(((.(((((.(((..((((((((((((.((..((((.((-.(((.(.(((.....))).)))).)).))))..))....))))))).)))))...)))..)))))...))). ( -31.40) >DroEre_CAF1 106677 118 - 1 GCCCA-UACCCCGUAUGCUAUUAUCCAAGUCAUUUAAUUCGAGUGGU-CUGCAGUCACAAUAAAUGUCGUAAGCAACAUUGGUCUAAAAAGGACAUUGGACUCAUACCCACAUCCUGGAA ...((-(((...)))))......((((..((.........))((((.-.((.((((.((((.(((((.(....).))))).((((.....))))))))))))))...))))....)))). ( -22.90) >DroYak_CAF1 109335 117 - 1 UACUA-UACCCUAUGUGCUAUUAUUCCAGUCCUUUAAUUCGAGUGGU-CUGCAGUCACAAUAAAUGUCGUAAACAACAUUGGUCCAAAGAGGACAUUGGACUCAUACCCACAUCCUGGG- .....-..(((.(((((.....((((.(((......))).))))(((-.((.((((.((((.(((((.(....).))))).((((.....)))))))))))))).))))))))...)))- ( -27.50) >consensus UUCCA_UACCCUAUAUGCUAUUAUCCAAGUCCUUUAAUUCGUGUGGU_CUGCAGUCACAAUAAAUGUCGUAAACAACAUUGGUCUAAAGAGGACAUUGGACUCAUACCCACAUCCUGGGA .......................((((((((((((.......((((........))))....(((((.(....).))))).......))))))).)))))......((((.....)))). (-20.30 = -20.54 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:29 2006