Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,639,513 – 14,639,618 |
Length | 105 |
Max. P | 0.597202 |
Location | 14,639,513 – 14,639,618 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 81.59 |
Mean single sequence MFE | -27.20 |
Consensus MFE | -17.30 |
Energy contribution | -17.53 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.12 |
Mean z-score | -1.89 |
Structure conservation index | 0.64 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14639513 105 - 22224390 GUUAAAUCAAAAUCAAGAUGGUAUUUCGGAUGCAGCAAUAAAGACCGUACU----CGUACAAUAAUAUCAUUCACAUAAAUACCAGGUUGCUUUGCUGAACUCCUCGGU ...........................(((..((((((....(((((((..----..))).........(((......)))....))))...))))))...)))..... ( -16.40) >DroSec_CAF1 109328 97 - 1 GUUGAAUCAAAAUCAAGAUGGUAGUUCGGCUGCAGCAAUAAAGACCGAAGAUGAGUGCACAGUACU------------CAUACCAGGUUGUUUUGCCGAACUCCUCGGU .((((.......))))((.((.((((((((...((((......(((....((((((((...)))))------------)))....)))))))..))))))))))))... ( -31.40) >DroSim_CAF1 107088 97 - 1 GUUGAAUCAAAAUCAAGAUGGUAGUUCGGCUGCAGCAAUAAAGACCGAAGAUGAGUGCACAGUACU------------CAUACCAGGUUGCUUUGCCGAACUCCUCGGU .((((.......))))((.((.((((((((...((((......(((....((((((((...)))))------------)))....)))))))..))))))))))))... ( -33.80) >consensus GUUGAAUCAAAAUCAAGAUGGUAGUUCGGCUGCAGCAAUAAAGACCGAAGAUGAGUGCACAGUACU____________CAUACCAGGUUGCUUUGCCGAACUCCUCGGU ................((.((.((((((((.(((((..................................................)))))...))))))))))))... (-17.30 = -17.53 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:28 2006