Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,619,378 – 14,619,498 |
Length | 120 |
Max. P | 0.865085 |
Location | 14,619,378 – 14,619,498 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.89 |
Mean single sequence MFE | -41.57 |
Consensus MFE | -26.18 |
Energy contribution | -27.60 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.34 |
Mean z-score | -1.79 |
Structure conservation index | 0.63 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.865085 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14619378 120 - 22224390 ACAUUUCACGGUGCUCGUUGCCGAUCGGAAUACGGAAGUGGGUUGUGCCGCGGCCACGUACUCCGUGUCCGGCCAAUCGUACAAGGCCUUCCUGCUGGCCUGUAACUAUGCGGCCACCAA ......(((((.(..(((.((((..(((..(((....)))..))).....)))).)))..).)))))...((((.((..((((.((((........))))))))...))..))))..... ( -45.30) >DroVir_CAF1 95063 120 - 1 CCAUUUCACCGUUAUGGUCGCCGAUCGCAAUACGCACGUGGGCUGCGCCGCAUCUACCUAUUCGGUUUCGGGUCAGUCCUACAAGGCCUUCCUCAUGGCCUGCAACUAUGCCGCCACCAA ..............((((.((.....(((....((..(((((((((.(((.....(((.....)))..)))).))).))))).(((((........))))))).....))).)).)))). ( -34.70) >DroPse_CAF1 100805 120 - 1 UCACUUCACCGUCCUGGUGGCCGAUCGCAAUACGGAUGUGGGAUGCGCCGUGUCCACCUACGCGGUGGAGGGCCAGCCCUACAAGGCCUUCCUCAUGGCCUGCAACUAUGCGGCCACCAA ..............(((((((((...((........((((((.((.(((...((((((.....)))))).)))))..))))))(((((........))))))).......))))))))). ( -52.50) >DroGri_CAF1 94020 120 - 1 CCAUUUCACCGUUAUGGUCGCUGAUCGCAACACCCGUGUGGGCUGUGCCGUAUCCACGUAUUCGGUAACUGGCCAGUCCUACAAGGCCUACCUUAUGGCCUGCAACUAUGCUGCCACCAA ..............((((.((.....(((......(((.((((((.((((...((........))....))))))))))))).(((((........))))).......))).)).)))). ( -36.80) >DroWil_CAF1 102526 120 - 1 ACAUUUCACUGUAUUGGUCUCAGAUCGUAAUACGGAUAUCGGUUGUGCCGCUUCCACCUUUUCGGUGAGUGGAAAAUCCUAUAAGGGUUUCCUCAUGGCCUGCAAUUUUGCUGCCACCAA .....((((((....(((........(.....)(((...(((.....)))..))))))....))))))(.(((((.(((.....)))))))).).((((..(((....))).)))).... ( -32.80) >DroAna_CAF1 212431 120 - 1 UCACUUCACCGUCCUGGUGGCGGACCGGAACACGGAAGUAGGCUGUGCAGUCUCUACCUAUUCCGUGUCCGGCAAGCCCUACAAGGCCUUCCUCAUGGCCUGCAAUUACGCUGCUACCAA ..............(((((((((.(((((.(((((((.((((..(........)..))))))))))))))))...........(((((........))))).........))))))))). ( -47.30) >consensus ACAUUUCACCGUCCUGGUCGCCGAUCGCAAUACGGAUGUGGGCUGUGCCGCAUCCACCUAUUCGGUGUCCGGCCAGUCCUACAAGGCCUUCCUCAUGGCCUGCAACUAUGCUGCCACCAA ..............((((.((((..............((((((((.((((....((((.....))))..))))))).))))).(((((........))))).........)))).)))). (-26.18 = -27.60 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:22 2006