Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,468,550 – 14,468,806 |
Length | 256 |
Max. P | 0.971993 |
Location | 14,468,550 – 14,468,663 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.77 |
Mean single sequence MFE | -38.90 |
Consensus MFE | -35.47 |
Energy contribution | -35.37 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.98 |
Structure conservation index | 0.91 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14468550 113 - 22224390 ACGCCAAAGCGCAAUCAAAAAGCGUUUUUAAUAAUGCGCUAAGUGAUUGUUAAGCGCUGGUGGAGAUGGAGGUCCCAACUCGAUGGCUUUCCCAAUUCCACAGCUCACA-------GAUU ........(((((((((...(((((.((....)).)))))...)))))))...))((((.(((((.(((..(..(((......)))..)..))).))))))))).....-------.... ( -35.30) >DroSim_CAF1 5237 113 - 1 ACGCCAAAGCGCAAUCAAAAAGCGUUUUUAAUAAUGCGCUAAGUGAUUGUUAAGCGCUGGUGGAGAUGGAGGGCCCAACUCGAUGGCUUUCCCAAUCCCACAGCUCACA-------GAUU ........(((((((((...(((((.((....)).)))))...)))))))...))((((..(((...((((((((.........))))))))...)))..)))).....-------.... ( -38.00) >DroYak_CAF1 1753 120 - 1 ACGCCAAAGCGCAAUCAAAAAGCGUUUUUAAUAAUGCGCUAAGUGAUUGUUAAGCGCUGGCGGAGAUGGAGAGCCCAACUCGAUGGCUUUCCCAAUCCCACAGCUCACAGCUCACGGAUU .(((((..(((((((((...(((((.((....)).)))))...)))))))...))..))))).....((((((((.........)))))))).(((((...(((.....)))...))))) ( -43.40) >consensus ACGCCAAAGCGCAAUCAAAAAGCGUUUUUAAUAAUGCGCUAAGUGAUUGUUAAGCGCUGGUGGAGAUGGAGGGCCCAACUCGAUGGCUUUCCCAAUCCCACAGCUCACA_______GAUU ........(((((((((...(((((.((....)).)))))...)))))))...))((((..(((...((((((((.........))))))))...)))..))))................ (-35.47 = -35.37 + -0.11)
Location | 14,468,583 – 14,468,703 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -38.63 |
Consensus MFE | -35.69 |
Energy contribution | -35.80 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.06 |
Structure conservation index | 0.92 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799914 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14468583 120 + 22224390 AGUUGGGACCUCCAUCUCCACCAGCGCUUAACAAUCACUUAGCGCAUUAUUAAAAACGCUUUUUGAUUGCGCUUUGGCGUGUUGGCCCAUUGAAAUCGAUAGGCGUUGCCCGGUGGAUCU .....((....))...((((((.(((((............))))).........(((((((.((((((...(..(((.((....)))))..).)))))).)))))))....))))))... ( -38.20) >DroSim_CAF1 5270 120 + 1 AGUUGGGCCCUCCAUCUCCACCAGCGCUUAACAAUCACUUAGCGCAUUAUUAAAAACGCUUUUUGAUUGCGCUUUGGCGUGUUGGCCCAUUGAAAUCGAUAGGCGUUGCCCGGUGGAUCU .(.(((.....))).)((((((.(((((............))))).........(((((((.((((((...(..(((.((....)))))..).)))))).)))))))....))))))... ( -38.10) >DroYak_CAF1 1793 120 + 1 AGUUGGGCUCUCCAUCUCCGCCAGCGCUUAACAAUCACUUAGCGCAUUAUUAAAAACGCUUUUUGAUUGCGCUUUGGCGUGUUGGCCCAUUGAAAUCGAUAGGCGUAGCCCAGUGGAUCU ..((((((((.((......((((((((....((((((...((((............))))...)))))).((....))))))))))..((((....)))).)).).)))))))....... ( -39.60) >consensus AGUUGGGCCCUCCAUCUCCACCAGCGCUUAACAAUCACUUAGCGCAUUAUUAAAAACGCUUUUUGAUUGCGCUUUGGCGUGUUGGCCCAUUGAAAUCGAUAGGCGUUGCCCGGUGGAUCU .(.(((.....))).)((((((.(.((.(((((....(..((((((..(((((((.....)))))))))))))..)...)))))(((.((((....)))).)))...))).))))))... (-35.69 = -35.80 + 0.11)
Location | 14,468,583 – 14,468,703 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -41.67 |
Consensus MFE | -38.45 |
Energy contribution | -38.57 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -3.01 |
Structure conservation index | 0.92 |
SVM decision value | 1.60 |
SVM RNA-class probability | 0.966504 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14468583 120 - 22224390 AGAUCCACCGGGCAACGCCUAUCGAUUUCAAUGGGCCAACACGCCAAAGCGCAAUCAAAAAGCGUUUUUAAUAAUGCGCUAAGUGAUUGUUAAGCGCUGGUGGAGAUGGAGGUCCCAACU ...((((((((((...((((((.(....).))))))......((....))(((((((...(((((.((....)).)))))...)))))))...)).))))))))..(((.....)))... ( -40.80) >DroSim_CAF1 5270 120 - 1 AGAUCCACCGGGCAACGCCUAUCGAUUUCAAUGGGCCAACACGCCAAAGCGCAAUCAAAAAGCGUUUUUAAUAAUGCGCUAAGUGAUUGUUAAGCGCUGGUGGAGAUGGAGGGCCCAACU ...((((((((((...((((((.(....).))))))......((....))(((((((...(((((.((....)).)))))...)))))))...)).))))))))..(((.....)))... ( -40.80) >DroYak_CAF1 1793 120 - 1 AGAUCCACUGGGCUACGCCUAUCGAUUUCAAUGGGCCAACACGCCAAAGCGCAAUCAAAAAGCGUUUUUAAUAAUGCGCUAAGUGAUUGUUAAGCGCUGGCGGAGAUGGAGAGCCCAACU ........((((((..((((((.(....).)))))).....(((((..(((((((((...(((((.((....)).)))))...)))))))...))..))))).........))))))... ( -43.40) >consensus AGAUCCACCGGGCAACGCCUAUCGAUUUCAAUGGGCCAACACGCCAAAGCGCAAUCAAAAAGCGUUUUUAAUAAUGCGCUAAGUGAUUGUUAAGCGCUGGUGGAGAUGGAGGGCCCAACU .........((((...((((((.(....).)))))).....(((((..(((((((((...(((((.((....)).)))))...)))))))...))..)))))..........)))).... (-38.45 = -38.57 + 0.11)
Location | 14,468,703 – 14,468,806 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.22 |
Mean single sequence MFE | -23.67 |
Consensus MFE | -15.42 |
Energy contribution | -15.76 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.09 |
Mean z-score | -1.36 |
Structure conservation index | 0.65 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.595779 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14468703 103 + 22224390 UGGCCAGCGGCUUAGCAUUAGAUACCCUAACUGCGAAGAUCUUGACAGGGUAUCGUAUUAUUUUCAACCAAUACAAAUACAU------------UGUAAGUUAAGAUAAUACUU-----A .((((...))))........((((((((.....(((.....)))..))))))))((((((((((.(((...(((((.....)------------)))).)))))))))))))..-----. ( -25.40) >DroSim_CAF1 5390 114 + 1 UGGCCAGCGGCUUAGCAUUAGAUACCCUAACUGCGGAGAUCUUGACAGGGUAUCGUAUUAUUUU-AAGUAAUAAAAAUACAUGUUACUUCAAGGUCUAAGUUAAAAUAAUACCA-----A .((((...))))........((((((((..(...((....)).)..))))))))((((((((((-((((((((........))))))).............)))))))))))..-----. ( -24.71) >DroYak_CAF1 1913 116 + 1 UGGCCAGCGGCUGAGCGUUAGAUACCCUAGCUCCACAGAUCUUGACAGGGUAUCAUAGUAUUUC-AAUCUAUAAAAAUAUAUCGUACUUAAAC---GAAAUUAAAAUAGUUUCAUCGGAA .((((...))))(((((.((((((((((..(............)..))))))))((((......-...)))).......)).)))........---(((((((...))))))).)).... ( -20.90) >consensus UGGCCAGCGGCUUAGCAUUAGAUACCCUAACUGCGAAGAUCUUGACAGGGUAUCGUAUUAUUUU_AACCAAUAAAAAUACAU__UACUU_AA__U_UAAGUUAAAAUAAUACCA_____A .((((...))))........((((((((..(............)..))))))))((((((((((......................................))))))))))........ (-15.42 = -15.76 + 0.34)
Location | 14,468,703 – 14,468,806 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.22 |
Mean single sequence MFE | -24.77 |
Consensus MFE | -17.01 |
Energy contribution | -17.24 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.15 |
Mean z-score | -1.39 |
Structure conservation index | 0.69 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767753 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14468703 103 - 22224390 U-----AAGUAUUAUCUUAACUUACA------------AUGUAUUUGUAUUGGUUGAAAAUAAUACGAUACCCUGUCAAGAUCUUCGCAGUUAGGGUAUCUAAUGCUAAGCCGCUGGCCA .-----..(((((((.((((((((((------------(.....)))))..))))))..)))))))(((((((((....(.....).....)))))))))....((((......)))).. ( -27.00) >DroSim_CAF1 5390 114 - 1 U-----UGGUAUUAUUUUAACUUAGACCUUGAAGUAACAUGUAUUUUUAUUACUU-AAAAUAAUACGAUACCCUGUCAAGAUCUCCGCAGUUAGGGUAUCUAAUGCUAAGCCGCUGGCCA .-----..(((((((((((((((........)))).....(((.......))).)-))))))))))(((((((((....(.....).....)))))))))....((((......)))).. ( -24.80) >DroYak_CAF1 1913 116 - 1 UUCCGAUGAAACUAUUUUAAUUUC---GUUUAAGUACGAUAUAUUUUUAUAGAUU-GAAAUACUAUGAUACCCUGUCAAGAUCUGUGGAGCUAGGGUAUCUAACGCUCAGCCGCUGGCCA ......(((...((((((((((((---((......))))((((....))))))))-))))))....(((((((((......((....))..)))))))))......)))(((...))).. ( -22.50) >consensus U_____UGGUAUUAUUUUAACUUA_A__UU_AAGUA__AUGUAUUUUUAUUGAUU_AAAAUAAUACGAUACCCUGUCAAGAUCUCCGCAGUUAGGGUAUCUAAUGCUAAGCCGCUGGCCA ........((((((((((((((.............................)))).))))))))))(((((((((................))))))))).........(((...))).. (-17.01 = -17.24 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:10 2006