Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,611,047 – 1,611,164 |
Length | 117 |
Max. P | 0.681284 |
Location | 1,611,047 – 1,611,164 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 88.25 |
Mean single sequence MFE | -40.67 |
Consensus MFE | -28.22 |
Energy contribution | -32.06 |
Covariance contribution | 3.84 |
Combinations/Pair | 1.09 |
Mean z-score | -2.12 |
Structure conservation index | 0.69 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1611047 117 + 22224390 AAGCGUGUUCAUCUUUGGCCAAAGUUCAUAAUUUUUGCGCCUUUAUUGGAAGCACGCUGGCAGGGGCGGCGACGGUAAAUGCCGUCUGCCAGCCACAUACUUGCGCCCUCCUUUGUU- .((((((((((.....((((((((........))))).))).....)))..)))))))((..((((((((((((((....)))))).))).((.........)))))))))......- ( -44.80) >DroSec_CAF1 6797 117 + 1 AAGCGUGUUCAUCUUUGGCCAAAGUUCAUAAUUUUUGCGCCUUUAUUGGGAGCACGCUGGCAGGGGCGGCGACGGUAACUGCCGUCUGCCAGCCACAUACUUGCGCCCUCCUUUGUU- .(((((((((......((((((((........))))).)))........)))))))))((..((((((((((((((....)))))).))).((.........)))))))))......- ( -47.74) >DroSim_CAF1 22752 109 + 1 AAGCGUGU-CAUCU-UGGCCAAG--UCAUAAUU-UUGCGCCUUUAUUGGGAGCACGCUGGCAG-GGCGGCGACGGUAACUGC-GUCUGCCAGCCACAUACUUGCGCCCUCCUUUGU-- .(((((((-..((.-.(((((((--.......)-))).)))......))..)))))))((.((-((((((((((.......)-))).))).((.........))))))))).....-- ( -39.80) >DroEre_CAF1 7606 103 + 1 AAGCGUGUUCAUCUUUGGCCAAAGUUCAUAAUUUUUGCGCCUUUAUU-------------CCGGGGCGGCGACGGUAACUGCC-CCUGCCAGCCACAUACUUGCGCCCUGCUUUGUU- ((((............((((((((........))))).)))......-------------..(((((((((..(((....)))-..)))).((.........)))))))))))....- ( -28.90) >DroYak_CAF1 8328 118 + 1 AAGCGGGUUCAUCUUUGGCCAAAGUUCAUAAUUUUUGCGCCUUUAUUGGGGCCACGUUGGCAGGGGCGGCGACAGUAACUGCCGCCUGCCAGCCACAUACUUGCGUCCUCCUUUGUUU ..((((.((((.....((((((((........))))).))).....)))).))..((((((((((((((.........))))).))))))))).........)).............. ( -42.10) >consensus AAGCGUGUUCAUCUUUGGCCAAAGUUCAUAAUUUUUGCGCCUUUAUUGGGAGCACGCUGGCAGGGGCGGCGACGGUAACUGCCGUCUGCCAGCCACAUACUUGCGCCCUCCUUUGUU_ .(((((((((......((((((((........))))).)))........)))))))))....((((((((((((((....)))))).))).((.........)))))))......... (-28.22 = -32.06 + 3.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:43 2006