Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,375,486 – 14,375,598 |
Length | 112 |
Max. P | 0.609498 |
Location | 14,375,486 – 14,375,598 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.51 |
Mean single sequence MFE | -26.20 |
Consensus MFE | -17.41 |
Energy contribution | -17.30 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.12 |
Mean z-score | -1.59 |
Structure conservation index | 0.66 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14375486 112 + 22224390 UUUUAUUUCGUUUCUAAUUUGCGCGCUGCGCCAGCAAAUUGAAACAUUUCGUGCAACGGAAACGAAGUGCAAUGACUCCAU----CGGUCUGUCGGGGAUCCCCAUUCC-UUCAC-CA-- ...((((((((((((...((((((((((...)))).....(((....))))))))).))))))))))))....(((.((..----.))...)))(((....))).....-.....-..-- ( -33.10) >DroPse_CAF1 99077 107 + 1 UUUUAUUUCGCUUCUAAUUUGCGCGCUGCCCCAGCAAAUUGAAACAUUUUGUGCAACGGAAACGAAGUGCAAUGACUUCCC----CAUUCG---------CCUCAUUCCCCCCAUUCCAC ..(((((.((((((....((((((((((...))))((((......)))).)))))).(....))))))).)))))......----......---------.................... ( -20.40) >DroSec_CAF1 91655 112 + 1 UUUUAUUUCGUUUCUAAUUUGCGCGCUGCGCCAGCAAAUUGAAACAUUUCGUGCAAAGGAAACGAAGUGCAAUGACUCCAU----CGGUCUGUCGGGGAUCCCCAUUCC-UUCAC-CG-- ...((((((((((((..(((((((((((...)))).....(((....))))))))))))))))))))))....(((.((..----.))...)))(((....))).....-.....-..-- ( -34.30) >DroEre_CAF1 82427 113 + 1 UUUUAUUUCGAUUCUAAUUUGCGCGGUGCGCCAGCAAAUUGAAACAUUUCGUGCAGCGGAAACGAAGUGCAAUGACUCCAU----CGGUCUGUCGGGGAUCCCCACUCC-CACUC-CCA- ........((((..((((((((..((....)).)))))))).........(..(..((....))..)..)...((((....----.)))).))))((((.......)))-)....-...- ( -28.60) >DroYak_CAF1 93630 113 + 1 UUUUAUUUCGUUUUUAAUUUGCGCGCUGCGCCAGCAAAUUGAAACAUUUAGUGCAACGGAAACGAAGUGCAAUGACUCCAAUCCCCACACUAUC----AUUCCUACACC-ACCAC-CAC- .......((((((((((((((((((...)))..)))))))))).......(..(..((....))..)..))))))...................----...........-.....-...- ( -20.40) >DroPer_CAF1 100893 106 + 1 UUUUAUUUCGCUUCUAAUUUGCGCGCUGCCCCAGCAAAUUGAAACAUUUUGUGCAACGGAAACGAAGUGCAAUGACUUCCC----CAUUCG---------CCUCAUUCC-CCCAUUCCAC ..(((((.((((((....((((((((((...))))((((......)))).)))))).(....))))))).)))))......----......---------.........-.......... ( -20.40) >consensus UUUUAUUUCGUUUCUAAUUUGCGCGCUGCGCCAGCAAAUUGAAACAUUUCGUGCAACGGAAACGAAGUGCAAUGACUCCAU____CAGUCUGUC____AUCCCCAUUCC_CCCAC_CCA_ ...(((((((.((((...((((((((((...)))).....(((....))))))))).)))).)))))))................................................... (-17.41 = -17.30 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:54 2006