Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,352,460 – 14,352,573 |
Length | 113 |
Max. P | 0.679635 |
Location | 14,352,460 – 14,352,573 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 97.52 |
Mean single sequence MFE | -29.52 |
Consensus MFE | -27.56 |
Energy contribution | -27.76 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.24 |
Structure conservation index | 0.93 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14352460 113 - 22224390 CAACGACAGCUGCACAAAAAGGAAACCGAUAAAAAGUCCAGCAAGGAUCUGACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCGCUGGGGCUGCUUUUGAAUUAUGG ...(((.((((((((.....(....)............(((.....((((........)))).....)))...)))))(((((((......)))))))))).)))........ ( -28.60) >DroSec_CAF1 65861 113 - 1 CAACGACAGCUGCACAAAAAGGAAACCGAUAAAAAGUCCAGCAAGGAUCUUACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCCCUGGGGCAGCUUUUGAAUUAUGG ...(((.((((((.......(....)..........(((((((.((..(((((((...((.......))...)).)))))..)).)))...)))))))))).)))........ ( -29.00) >DroSim_CAF1 62214 113 - 1 CAACGACAGCUGCACAAAAAGGAAACCGAUAAAAAGUCCAGCAAGGAUCUGACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCCCUGGGGCUGCUUUUGAAUUAUGG ...(((.((((((((.....(....)............(((.....((((........)))).....)))...)))))(((((((......)))))))))).)))........ ( -28.60) >DroEre_CAF1 61566 113 - 1 CAACGACAGCUGCACAAAAAGGAAACCGAUAAAAAGUCCAGCAAGGAUCUGACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCCCUGGGGCUGCUUUUGAGUUAUGG ...(((.((((((((.....(....)............(((.....((((........)))).....)))...)))))(((((((......)))))))))).)))........ ( -28.60) >DroYak_CAF1 69194 113 - 1 CAACGACAGCUGCACAGAAGGGAAACCGAUAAGAAGUCCAGCAAGGAUCUGACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCCCUGGGGCUGCUUUUGAAUUAUGG ...(((.((((((((....((....))...........(((.....((((........)))).....)))...)))))(((((((......)))))))))).)))........ ( -32.80) >consensus CAACGACAGCUGCACAAAAAGGAAACCGAUAAAAAGUCCAGCAAGGAUCUGACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCCCUGGGGCUGCUUUUGAAUUAUGG ...(((.((((((((.....(....)............(((.....((((........)))).....)))...)))))(((((((......)))))))))).)))........ (-27.56 = -27.76 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:39 2006