Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,343,291 – 14,343,393 |
Length | 102 |
Max. P | 0.704908 |
Location | 14,343,291 – 14,343,393 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 79.61 |
Mean single sequence MFE | -30.53 |
Consensus MFE | -12.87 |
Energy contribution | -15.23 |
Covariance contribution | 2.36 |
Combinations/Pair | 1.19 |
Mean z-score | -2.63 |
Structure conservation index | 0.42 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.704908 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14343291 102 + 22224390 CAAUUUAUCAAGGGCAUCCGCCUGUCGCACAUGUGUA-------------UGGGUUUGUUUUUGUCCGGCUCUAGUUGAUUGCCAUUGCUUUUUGCAUUGGUUUAACUUUUGCUG ........((((((((...(((((((((....))).)-------------))))).))))))))..((((...((((((..((((.(((.....))).))))))))))...)))) ( -32.40) >DroSec_CAF1 55296 102 + 1 CAAUUUAUCAAGGGCAUCCGCCUGUCGCACAUGUGCA-------------UGGGUUUGUUUUUGCCCGGCUCUAGUUGAUUGCCAUUGCUUUUUGCAUUGGUUUAACUUUUGCUG ...........(((((...((((((.(((....))))-------------))))).......)))))(((...((((((..((((.(((.....))).))))))))))...))). ( -34.50) >DroEre_CAF1 53739 101 + 1 CAAUUUAUCAAGGGCAUCCGCCUGUCGCACAUGUGUA-------------UGGGUUUGUUUUUGC-CGGCUCCAGUUGAUUGCCAUUGCUUUUUGCAUUGGUUUAACUUUUGCUG ........((((((((...(((((((((....))).)-------------))))).)))))))).-((((...((((((..((((.(((.....))).))))))))))...)))) ( -31.50) >DroYak_CAF1 57710 110 + 1 CAAUUUAUCAAGGGCAUCCGUCUGUCGCACAUGUGUAUG-----GAUGUAUGGGUUUGUUUUUGCCCGGCUCUAGUUGAUUGCCAUUGCUUUUUGCAUUGGUUUAACUUUUGCUG .............((((((((....(((....))).)))-----)))))..((((........))))(((...((((((..((((.(((.....))).))))))))))...))). ( -34.60) >DroAna_CAF1 122617 88 + 1 CAAUUUAUCAAGGGCAUCCGACUGUCGCACAUGUGUC-------------GGUGUUGGAGUUUGCCCUUCUCCA--------------CCGAUUGCAUUGAUUUAACUUUUUCUG ......(((((.((((......))))(((.....(((-------------((((..((((......))))..))--------------)))))))).)))))............. ( -21.70) >DroPer_CAF1 62566 112 + 1 CCAUUCA--CAGGGCAUCCACUUGGCGCACAUGUCUCGGAAGUCAAUGU-UGGGUAUUGGUUUACCCUGCUCUAGUUGAUUGCCAUUGCUUUUUGCAUUGAUUUAACUUUUGCUG .......--(((((((..((.((((.((((((....(....)...))))-.(((((......))))).)).)))).))..))))..(((.....)))...............))) ( -28.50) >consensus CAAUUUAUCAAGGGCAUCCGCCUGUCGCACAUGUGUA_____________UGGGUUUGUUUUUGCCCGGCUCUAGUUGAUUGCCAUUGCUUUUUGCAUUGGUUUAACUUUUGCUG ............((((...(((....(((....)))...............((((........)))))))...((((((..((((.(((.....))).))))))))))..)))). (-12.87 = -15.23 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:35 2006