Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,590,132 – 1,590,222 |
Length | 90 |
Max. P | 0.506648 |
Location | 1,590,132 – 1,590,222 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 78.05 |
Mean single sequence MFE | -20.08 |
Consensus MFE | -13.18 |
Energy contribution | -13.35 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.18 |
Mean z-score | -1.16 |
Structure conservation index | 0.66 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1590132 90 - 22224390 UCACGUUGCAGUUAAUAGGAUUUGGCUGA---AGAGCGGAAUGAAAUUAAUUGUUUCAUUUGUUUAUAAAACGU---UCA------------AGUCACUGCUCUUG---CU ........(((((((......)))))))(---(((((((((((((((.....)))))))).(((.....)))..---...------------.....)))))))).---.. ( -22.50) >DroPse_CAF1 70469 93 - 1 UAACGUUGCAGUUAAUAGGAUUUGGCUGAAACAGAGUGGAAUCAAAUUAAUUGUUUCAUUUGUUUACAAAAUAC---UCA------------AGUCAUUGUUGUUG---CA (((((..(((((((((..(((((.(((.......))).)))))..)))))))))..).((((....))))....---...------------.......))))...---.. ( -19.10) >DroGri_CAF1 71426 89 - 1 ---CGUUGCAGUUAAUAGGAUUUAGCUGU---AACAUGAAAUUAAAUUAAUUGUUGCAUUUGUUUACAAAAUAC---CCA------------UGUCUU-CUUGUUGUUGUU ---.(((((((((((......))))))))---)))...............((((.((....))..)))).....---...------------......-............ ( -15.60) >DroYak_CAF1 51516 90 - 1 UCACGUUGCAGUUAAUAGGAUUUGGCUGG---AGAGUGGAAUGAAAUUAAUUGUUUCAUUUGUUUAUAAAACGU---UCA------------AGUCACUGCUCGUG---CA .(((....(((((((......)))))))(---(((((((((((((((.....)))))))))(((.....)))..---...------------...)))).))))))---.. ( -22.80) >DroAna_CAF1 66866 105 - 1 UUACGUUGCAGUUAAUAGGAUUUGGCUGG---AGAACGGAAUCAAAUUAAUUGUUUCAUUUGUUUACAAAACGGAGUCAGAGUCAGAGCCAGAGUGAUUGUUGUUG---CA ....((.(((((((...((.(((((((.(---(...(((((.(((.....))).))).((((....)))).))...))..))))))).))....)))))))....)---). ( -21.40) >DroPer_CAF1 71222 93 - 1 UAACGUUGCAGUUAAUAGGAUUUGGCUGAAACAGAGUGGAAUCAAAUUAAUUGUUUCAUUUGUUUACAAAAUAC---UCA------------AGUCAUUGUUGUUG---CA (((((..(((((((((..(((((.(((.......))).)))))..)))))))))..).((((....))))....---...------------.......))))...---.. ( -19.10) >consensus UAACGUUGCAGUUAAUAGGAUUUGGCUGA___AGAGUGGAAUCAAAUUAAUUGUUUCAUUUGUUUACAAAACAC___UCA____________AGUCAUUGUUGUUG___CA ....(..(((((((((..(((((.(((.......))).)))))..)))))))))..).((((....))))......................................... (-13.18 = -13.35 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:35 2006