Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,286,721 – 14,286,835 |
Length | 114 |
Max. P | 0.999266 |
Location | 14,286,721 – 14,286,835 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.98 |
Mean single sequence MFE | -32.60 |
Consensus MFE | -28.28 |
Energy contribution | -28.56 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -2.61 |
Structure conservation index | 0.87 |
SVM decision value | 3.47 |
SVM RNA-class probability | 0.999266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14286721 114 + 22224390 GUGAGCGUGUGUGUACUUUUUGUUUUUUUUUUACUUUUAUUGUU---GUUCGGGCUUAACCGAAAUGAGCUUUGAAAAUGGUUUAUGCGCCAUUUUGUGU---GUGCGCCGCAGCUUAUG (((((((((.((((((.....................((..(((---.(((((......)))))...)))..))((((((((......))))))))....---))))))))).)))))). ( -32.10) >DroSec_CAF1 27041 110 + 1 GUGAGCGUGUGUGUACUUUUUGUUU----UUUACUUUUAUUGUU---GCUCGGGCUUAACCGAAAUGAGCUUUCAAAAUGGUUUAUGCGCCAUUUUGUGU---GUGCGCCGCAGCUUAUG (((((((((.((((((.........----...............---..((((......)))).....((...(((((((((......))))))))).))---))))))))).)))))). ( -33.30) >DroSim_CAF1 30366 113 + 1 GUGAGCGUGUGUGUACUUUUUGUUU----UUUACUUUUAUUGUUCGGGGUCGGGCUUAACCGAAAUGAGCUUUCAAAAUGGUUUAUGCGCCAUUUUGUGU---GUGCGCCGCAGCUUAUG (((((((((.((((((.........----............(((((...((((......))))..)))))...(((((((((......)))))))))...---))))))))).)))))). ( -38.50) >DroEre_CAF1 28757 110 + 1 GUGUGUGUGUGUGUACUUUUUGUUU----UUUACUCUUAUUGUU---GCUCUGGCUUAACCGAAAUGAGCUUUCAAAAUGGUUUAUGCGCCGUUUUGUGU---GUGCGCCGCAGCUUAUG ...((((.(((..(((.........----...............---(((((((.....)))....))))...(((((((((......))))))))).))---)..)))))))....... ( -27.20) >DroYak_CAF1 30622 113 + 1 GUGUGCGUGUGUGUACUUUUUGUUU----UUUACUUUUAUUGUU---GCUGCGGCUUAACCGAAAUGAGCUUUCAAAAUGGUUUAUGCGCCAUUUUGUGUUUUGUGCGCCGCAGCUUAUG (((..(....)..))).........----...............---((((((((...((......((((...(((((((((......))))))))).)))).))..))))))))..... ( -31.90) >consensus GUGAGCGUGUGUGUACUUUUUGUUU____UUUACUUUUAUUGUU___GCUCGGGCUUAACCGAAAUGAGCUUUCAAAAUGGUUUAUGCGCCAUUUUGUGU___GUGCGCCGCAGCUUAUG (((((((((.((((((....................................((((((.......))))))..(((((((((......)))))))))......))))))))).)))))). (-28.28 = -28.56 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:57 2006