Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,261,462 – 14,261,604 |
Length | 142 |
Max. P | 0.837196 |
Location | 14,261,462 – 14,261,564 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 92.45 |
Mean single sequence MFE | -19.71 |
Consensus MFE | -14.40 |
Energy contribution | -14.20 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.24 |
Mean z-score | -1.99 |
Structure conservation index | 0.73 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14261462 102 + 22224390 UCCUUCAUUAAGCCGAAAUAUCCUUUUCAUUACUUAGCAGUAUUUACACUUACAAGUAGUUUAUGCUACCUGACUGGCAUAAAUCCCGAUUUCAUGGGAGAC ...........(((((((......)))).(((..(((((....((((........))))....)))))..)))..))).....(((((......)))))... ( -20.40) >DroSec_CAF1 2203 101 + 1 UCCUUUAUUAAGCCGAUAUAUCCUUUCCAUUACUUAGCAAUAUUUACUCUUACAAGUAGUUUAUGCUACCUGACUGGC-UAAAACCCGAUUUCAUGGGAGAC ..........((((((....)).......(((..(((((....(((((......)))))....)))))..)))..)))-)....((((......)))).... ( -15.90) >DroSim_CAF1 6193 102 + 1 UCCUUCAUUAAGCUGAUAUAUCCUUUCCAUUACUUAGCAAUAUUUACUCUUACAAGUAGUUUAUGCUACCUGACUGGCAUAAAUCCCGAUUUCAUGGGAGAC ...........(((((.................))))).....(((((......)))))(((((((((......)))))))))(((((......)))))... ( -17.53) >DroEre_CAF1 5478 101 + 1 CCCUUCAUUAAAUCAAAAUAUCCCUCCCAUUAC-UAGCAAUAUUUACUCUUACAAGUAGUUUAUGCUACCUGACUGGCAUAAAUCCCGAUUUCAUGGGGGAC .(((((((.(((((.((((((..((........-.))..))))))..........(..((((((((((......))))))))))..)))))).))))))).. ( -23.60) >DroYak_CAF1 5244 102 + 1 GCCUUCAUUAAAUCGAAAUAUCCUUUCCGUUACUUAGCAAUAUUUACUCUUACAAGUAGUUUAUGCUACCUGACUGGCAUAAAUCCCGAUUUCAUGGGAGAC (((...........((((.....)))).((((..(((((....(((((......)))))....)))))..)))).))).....(((((......)))))... ( -21.10) >consensus UCCUUCAUUAAGCCGAAAUAUCCUUUCCAUUACUUAGCAAUAUUUACUCUUACAAGUAGUUUAUGCUACCUGACUGGCAUAAAUCCCGAUUUCAUGGGAGAC .......................(((((((..............((((......))))((((((((((......)))))))))).........))))))).. (-14.40 = -14.20 + -0.20)
Location | 14,261,494 – 14,261,604 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 83.64 |
Mean single sequence MFE | -20.06 |
Consensus MFE | -15.02 |
Energy contribution | -15.70 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.05 |
Mean z-score | -1.96 |
Structure conservation index | 0.75 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14261494 110 + 22224390 CUUAGCAGUAUUUACACUUACAAGUAGUUUAUGCUACCUGACUGGCAUAAAUCCCGAUUUCAUGGGAGACUUGAUAUUUUCUCUUCCCAAAUUUUCACAUAGUUAUACAU .......((((..((........(..((((((((((......))))))))))..)((.....((((((....((.....))..)))))).....)).....)).)))).. ( -21.60) >DroSec_CAF1 2235 106 + 1 CUUAGCAAUAUUUACUCUUACAAGUAGUUUAUGCUACCUGACUGGC-UAAAACCCGAUUUCAUGGGAGACUUGAUAUUUUCUCUUC-CAAAUUUUCACAUGUA--UACAU .(((((..((........))((.(((((....))))).))....))-))).....((.....(((((((...((.....)))))))-)).....)).......--..... ( -16.30) >DroSim_CAF1 6225 110 + 1 CUUAGCAAUAUUUACUCUUACAAGUAGUUUAUGCUACCUGACUGGCAUAAAUCCCGAUUUCAUGGGAGACUUGAUAUUUCCUCUUCCCAAAUUUUCACAUGUAUAUACAU ..................((((.(..((((((((((......))))))))))..)((.....(((((((...((....)).)).))))).....))...))))....... ( -19.90) >DroEre_CAF1 5510 106 + 1 C-UAGCAAUAUUUACUCUUACAAGUAGUUUAUGCUACCUGACUGGCAUAAAUCCCGAUUUCAUGGGGGACCCGAUAUUUUGCCUCCCCAAAUUUUCGCAUAUAUAUA--- .-..((.................(..((((((((((......))))))))))..)((.......(((((..(((....)))..)))))......)))).........--- ( -24.32) >DroYak_CAF1 5276 84 + 1 CUUAGCAAUAUUUACUCUUACAAGUAGUUUAUGCUACCUGACUGGCAUAAAUCCCGAUUUCAUGGGAGACUUGAUAUUUUCACU-------------------------- ....................(((((..(((((((((......)))))))))(((((......))))).)))))...........-------------------------- ( -18.20) >consensus CUUAGCAAUAUUUACUCUUACAAGUAGUUUAUGCUACCUGACUGGCAUAAAUCCCGAUUUCAUGGGAGACUUGAUAUUUUCUCUUCCCAAAUUUUCACAUAUAUAUACAU ....................(((((..(((((((((......)))))))))(((((......))))).)))))..................................... (-15.02 = -15.70 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:15 2006