Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,248,813 – 14,248,944 |
Length | 131 |
Max. P | 0.628675 |
Location | 14,248,813 – 14,248,910 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 91.32 |
Mean single sequence MFE | -28.04 |
Consensus MFE | -24.38 |
Energy contribution | -24.70 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -1.23 |
Structure conservation index | 0.87 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14248813 97 + 22224390 CGCUUUCGUUGCGCUGCCAACUCAAUUAAAGUGUCCCCACGGACACGGAGUAGUAGCAGUUU--------UUGGCAGUUUGGCAUAUAUGCGCACACACAGGCAC .((((..((((((((((((((((.((((..((((((....))))))....)))).).)))..--------.)))))))...(((....)))))).))..)))).. ( -32.10) >DroSec_CAF1 157000 97 + 1 CGCUUUCGUUUCGCUGCCAACUCAAUUAAAGUGUCCCCACGGACACGGAGUAGUAGCAGUUU--------UUGGCAGUUUGGCAUUUAUACGCACACACAGGCAC .((((.......(((((((((((.((((..((((((....))))))....)))).).)))..--------.))))))).((((........)).))...)))).. ( -26.80) >DroSim_CAF1 138338 97 + 1 CGCUUUCGUUUCGCUGCCAACUCAAUUAAAGUGUCCCCACGGACACGGAGUAGUAGCAGUUU--------UUGGCAGUUUGGCAUAUAUACGCACACACAGGCAC .((((.......(((((((((((.((((..((((((....))))))....)))).).)))..--------.))))))).((((........)).))...)))).. ( -26.80) >DroEre_CAF1 144127 105 + 1 CGCUUUCGUUUCGCUGCCAACUCAAUUAAAGUGUCCCCACGGACACGGAGUAGCAGCAGUUUUCCUUUUUUCGCCAGUUUGGCAUAUGUACGCACACACCAGCAC .(((........(((((..((((.......((((((....)))))).)))).)))))...............(((.....))).................))).. ( -28.90) >DroYak_CAF1 149159 96 + 1 UGCUUUCGUUGCGCUGCCAACUCAAUUAAAGUGUCCCCACGGACAGGGAGUAGUAGCAGUUU--------UUGGCAGUUUGGCAUAUAUGCGCACACACAUGCA- .((....((((((((((((((((.((((...(((((....))))).....)))).).)))..--------.)))))))...(((....)))))).))....)).- ( -25.60) >consensus CGCUUUCGUUUCGCUGCCAACUCAAUUAAAGUGUCCCCACGGACACGGAGUAGUAGCAGUUU________UUGGCAGUUUGGCAUAUAUACGCACACACAGGCAC .((((.......(((((..((((.......((((((....)))))).)))).)))))...................((.((((........)).)).)))))).. (-24.38 = -24.70 + 0.32)
Location | 14,248,849 – 14,248,944 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 73.56 |
Mean single sequence MFE | -32.14 |
Consensus MFE | -10.94 |
Energy contribution | -14.38 |
Covariance contribution | 3.44 |
Combinations/Pair | 1.20 |
Mean z-score | -1.76 |
Structure conservation index | 0.34 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.628675 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14248849 95 - 22224390 GCAUGUGGCGUAUGGCGUAUGGCGUAUGGCA------UAUGUGCCUGUGUGUGCGCAUAUAUGCCAAACUGCCAA--------AAACUGCUACUACUCCGUGUCCGUGG (.(..(((.(((((((((.((((((.(((((------((((((((.......).)))))))))))).)).)))).--------..)).)))).))).)))..).).... ( -37.20) >DroSec_CAF1 157036 90 - 1 -----------GUGGCGUAUGGCGUAUGGCAUAUAUGUAUGUGCCUGUGUGUGCGUAUAAAUGCCAAACUGCCAA--------AAACUGCUACUACUCCGUGUCCGUGG -----------(((((((.((((((.(((((((((((((..((....))..))))))))..))))).)).)))).--------..)).)))))................ ( -29.30) >DroSim_CAF1 138374 101 - 1 GCAUGUGGCAUGUGGCGUAUGGCGUAUGGCAUAUAUGUAUGUGCCUGUGUGUGCGUAUAUAUGCCAAACUGCCAA--------AAACUGCUACUACUCCGUGUCCGUGG .((((.((((((((((((.((((((.((((((((..(((((..(......)..))))))))))))).)).)))).--------..)).)))))......))))))))). ( -38.20) >DroEre_CAF1 144163 102 - 1 GCAUGCGGCAUGUGGCUCGUGGCGUAU-------GUGUUGGUGCUGGUGUGUGCGUACAUAUGCCAAACUGGCGAAAAAAGGAAAACUGCUGCUACUCCGUGUCCGUGG .((((.((((((..(...(..((....-------.(((..((..(((((((((....))))))))).))..))).....((.....))))..)..)..)))))))))). ( -35.40) >DroYak_CAF1 149195 74 - 1 GCAUGCGGC--------------GUAU-------G------UGCAUGUGUGUGCGCAUAUAUGCCAAACUGCCAA--------AAACUGCUACUACUCCCUGUCCGUGG ......(((--------------((.(-------(------.(((((((((....))))))))))).)).)))..--------......((((.((.....))..)))) ( -20.60) >consensus GCAUGCGGC_UGUGGCGUAUGGCGUAUGGCA___AUGUAUGUGCCUGUGUGUGCGUAUAUAUGCCAAACUGCCAA________AAACUGCUACUACUCCGUGUCCGUGG ......((((..(((((((((((((((.......................)))))).)))))))))...))))................((((.((.....))..)))) (-10.94 = -14.38 + 3.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:03 2006