Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,247,730 – 14,247,820 |
Length | 90 |
Max. P | 0.681452 |
Location | 14,247,730 – 14,247,820 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 88.74 |
Mean single sequence MFE | -26.08 |
Consensus MFE | -19.24 |
Energy contribution | -19.24 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.15 |
Mean z-score | -1.81 |
Structure conservation index | 0.74 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681452 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14247730 90 - 22224390 GGGGCGUGGUCCCAAAGAUUAGCAUUCAAACG------GUACAGAAAGCAGUCGCUUUGCCUUGGCAAUUGAAAGUUUGUCUUUGAUUGAAAUAGU (((((...)))))((((((.(((.(((((...------......(((((....)))))((....))..))))).))).))))))............ ( -23.60) >DroSec_CAF1 155959 90 - 1 GGGGCGUGGUCCCAAAGAUUAGCAUUCAAAUG------UGAGAGGAAGCAGCCGCUUUGCCUUGCCAAUUGAAAGUUUGUCUUUGAUUGAAAUAGU (((((...)))))((((((.(((.(((((..(------..((..(((((....)))))..))..)...))))).))).))))))............ ( -26.80) >DroSim_CAF1 137284 90 - 1 GGGGCGUGGUCCCAAAGAUUAGCAUUCAAAUG------UUAGAGGAAGCAGCCGCUUUGCCUUGGCAAUUGAAAGUUUGUCUUUGAUUGAAAUAGU (((((...)))))((((((.(((.(((((.((------(((.(((.(((....)))...)))))))).))))).))).))))))............ ( -27.40) >DroEre_CAF1 143140 96 - 1 GGGGCGUGGUCCCGAAGAUUAGCAUUCAAAUGGAGGAGGAAGAGGAAGCAGUCGCUUUGGCUUGCCAAUUGAAAGUUUGUCUUUGAUUGAAAUAGU (((((...)))))((((((.(((.(((((.(((......(((..(((((....)))))..))).))).))))).))).))))))............ ( -27.70) >DroYak_CAF1 148035 90 - 1 GAGGCGUGGUCGCAAGGAUCAGCAUUGAAGUG------GAAGAGGAAGCAGUCACUUUGGCUUGCCAAUUGAAAGUUGGUCUUUGAUUGAAAUAGU ...((....((.(((((((((((.((.((.((------((((..((((......))))..))).))).)).)).)))))))))))...))....)) ( -24.90) >consensus GGGGCGUGGUCCCAAAGAUUAGCAUUCAAAUG______GAAGAGGAAGCAGUCGCUUUGCCUUGCCAAUUGAAAGUUUGUCUUUGAUUGAAAUAGU (((((...)))))((((((.(((.(((((...............(((((....)))))((....))..))))).))).))))))............ (-19.24 = -19.24 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:59 2006